| SRR4457251 | 2nd_leaf | DAH4 | 2.68 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.45 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.96 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.40 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.82 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.42 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.01 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.04 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.64 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.09 | MC |
| SRR7265400 | coleoptile | 2dA | 3.25 | MC |
| SRR7265409 | coleoptile | 3dN | 4.30 | MC |
| SRR7265412 | coleoptile | 4dA | 0.96 | MC |
| SRR7265413 | coleoptile | 4dA | 2.80 | MC |
| SRR7265414 | coleoptile | 4dA | 1.97 | MC |
| SRR7265415 | coleoptile | 4dN | 1.66 | MC |
| SRR7265416 | coleoptile | 4dN | 2.97 | MC |
| SRR7265417 | coleoptile | 4dN | 3.74 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.56 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.18 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.35 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.58 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.32 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.54 | MC |
| SRR7265376 | embryo | 1hA | 0.64 | MC |
| SRR7265377 | embryo | 1hA | 2.48 | MC |
| SRR7265378 | embryo | 1hA | 2.47 | MC |
| SRR7265380 | embryo | 1hN | 0.75 | MC |
| SRR7265381 | embryo | 1hN | 2.79 | MC |
| SRR7265382 | embryo | 3hA | 1.24 | MC |
| SRR7265383 | embryo | 3hA | 0.47 | MC |
| SRR7265384 | embryo | 3hA | 1.95 | MC |
| SRR7265385 | embryo | 3hN | 1.84 | MC |
| SRR7265386 | embryo | 3hN | 2.12 | MC |
| SRR7265387 | embryo | 3hN | 1.78 | MC |
| SRR7265391 | embryo | 12hN | 3.00 | MC |
| SRR7265392 | embryo | 12hN | 4.31 | MC |
| SRR7265393 | embryo | 12hN | 3.81 | MC |
| SRR7265395 | embryo | 24hA | 4.83 | MC |
| SRR7265397 | embryo | 24hN | 2.63 | MC |
| SRR7265398 | embryo | 24hN | 4.22 | MC |
| SRR2338867 | endosprem | control | 0.88 | MC |
| SRR2338868 | endosprem | high_temperature | 1.87 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.22 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.83 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.37 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.61 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.40 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.94 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.76 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.24 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.97 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.75 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.14 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.28 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.33 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.75 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.45 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.83 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.10 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.75 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.49 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.05 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.49 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.95 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.51 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.05 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.49 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.95 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.51 | MC |
| SRR1761528 | leaf | drought | 3.05 | MC |
| SRR1761529 | leaf | drought | 1.49 | MC |
| SRR1761530 | leaf | control | 1.95 | MC |
| SRR1761531 | leaf | control | 2.51 | MC |
| SRR504365 | leaf | wt | 3.83 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.17 | MC |
| SRR6417968 | leaf | H2O_control | 2.20 | MC |
| SRR6417969 | leaf | H2O_control | 1.74 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.98 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.20 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.07 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.22 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.59 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.23 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.63 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.24 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.52 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.62 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.59 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.11 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.93 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.93 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.87 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.10 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.11 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.25 | MC |
| SRR6502088 | leaf | control | 2.86 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.35 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.11 | MC |
| SRR6502100 | leaf | control | 0.35 | MC |
| SRR6502101 | leaf | control | 1.47 | MC |
| SRR6502102 | leaf | control | 1.78 | MC |
| SRR5856927 | leaf | control | 1.56 | MC |
| SRR5856930 | leaf | salt | 1.24 | MC |
| SRR5856931 | leaf | salt | 1.70 | MC |
| SRR5856933 | leaf | control | 2.21 | MC |
| SRR5856937 | leaf | salt | 1.70 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.80 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 6.35 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.57 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 4.56 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.86 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.57 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.67 | MC |
| SRR6168973 | leaf | none (control) | 0.33 | MC |
| SRR6168974 | leaf | none (control) | 0.55 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.55 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.47 | MC |
| SRR6168979 | leaf | none (control) | 0.90 | MC |
| SRR6168980 | leaf | none (control) | 1.11 | MC |
| SRR6168981 | leaf | none (control) | 1.27 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.95 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.73 | MC |
| SRR8582892 | panicle | PM | 1.09 | MC |
| SRR4947496 | root | control | 2.83 | MC |
| SRR5110448 | panicle | Dusk | 5.16 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.57 | MC |
| SRR5110459 | panicle | Dawn + 21h | 4.16 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.04 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.02 | MC |
| SRR5126147 | root | "mock,1_day" | 4.26 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.39 | MC |
| SRR5126155 | root | "mock,7_days" | 1.75 | MC |
| SRR5126157 | root | "mock,7_days" | 3.04 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.45 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.51 | MC |
| SRR4947484 | root | Al | 4.33 | MC |
| SRR4947485 | root | Al | 4.26 | MC |
| SRR4947493 | root | Al | 3.26 | MC |
| SRR4947497 | root | control | 5.29 | MC |
| SRR4947505 | root | control | 4.49 | MC |
| SRR4947509 | root | Al | 3.36 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.38 | MC |
| SRR6502095 | root | control | 0.98 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.78 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502106 | root | control | 0.69 | MC |
| SRR6502107 | root | control | 0.99 | MC |
| SRR6502108 | root | control | 4.10 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.83 | MC |
| SRR6441554 | seedling | wild_type | 0.23 | MC |
| SRR6441555 | seedling | wild_type | 0.35 | MC |
| SRR2154086 | seedling | wt | 1.48 | MC |
| SRR2154082 | seedling | wt | 0.49 | MC |
| SRR2154083 | seedling | wt | 0.64 | MC |
| SRR2154084 | seedling | wt | 0.96 | MC |
| SRR2154085 | seedling | wt | 0.72 | MC |
| SRR2154087 | seedling | wt | 0.42 | MC |
| SRR3098741 | seedling | wt | 1.23 | MC |
| SRR3098742 | seedling | wt | 0.23 | MC |
| SRR3098743 | seedling | wt | 0.17 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.57 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.50 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 8.22 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.78 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.27 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.96 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.02 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.60 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.10 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.78 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.96 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.00 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.55 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.76 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.98 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.52 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.54 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 10.07 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.67 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.75 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.12 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.78 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.93 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.48 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.50 | MC |