| SRR4457253 | 2nd_leaf | DAH12 | 3.43 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.65 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.55 | MC |
| SRR358798 | callus | wt | 7.37 | MC |
| SRR6320473 | carpel | wt | 3.94 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.09 | MC |
| SRR4947495 | root | control | 1.66 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.77 | MC |
| SRR7265401 | coleoptile | 2dA | 3.35 | MC |
| SRR7265402 | coleoptile | 2dA | 3.62 | MC |
| SRR7265403 | coleoptile | 2dN | 2.97 | MC |
| SRR7265404 | coleoptile | 2dN | 3.21 | MC |
| SRR7265405 | coleoptile | 2dN | 3.03 | MC |
| SRR7265408 | coleoptile | 3dA | 1.64 | MC |
| SRR7265409 | coleoptile | 3dN | 4.08 | MC |
| SRR7265410 | coleoptile | 3dN | 2.38 | MC |
| SRR7265411 | coleoptile | 3dN | 3.24 | MC |
| SRR7265412 | coleoptile | 4dA | 2.28 | MC |
| SRR7265413 | coleoptile | 4dA | 3.59 | MC |
| SRR7265415 | coleoptile | 4dN | 2.69 | MC |
| SRR7265416 | coleoptile | 4dN | 3.91 | MC |
| SRR7265417 | coleoptile | 4dN | 3.99 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.57 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.96 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.52 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 3.28 | MC |
| SRR7265383 | embryo | 3hA | 4.49 | MC |
| SRR7265385 | embryo | 3hN | 4.16 | MC |
| SRR7265386 | embryo | 3hN | 2.61 | MC |
| SRR7265387 | embryo | 3hN | 2.98 | MC |
| SRR7265388 | embryo | 12hA | 3.15 | MC |
| SRR7265389 | embryo | 12hA | 2.67 | MC |
| SRR7265390 | embryo | 12hA | 4.19 | MC |
| SRR7265391 | embryo | 12hN | 3.99 | MC |
| SRR7265392 | embryo | 12hN | 2.98 | MC |
| SRR7265393 | embryo | 12hN | 3.33 | MC |
| SRR7265394 | embryo | 24hA | 2.82 | MC |
| SRR7265395 | embryo | 24hA | 3.37 | MC |
| SRR7265396 | embryo | 24hA | 3.10 | MC |
| SRR7265397 | embryo | 24hN | 4.06 | MC |
| SRR7265398 | embryo | 24hN | 4.42 | MC |
| SRR7265399 | embryo | 24hN | 2.48 | MC |
| SRR2338868 | endosprem | high_temperature | 0.68 | MC |
| SRR2338869 | endosprem | high_temperature | 0.76 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.88 | MC |
| SRR8060836 | leaf | wild_type | 3.40 | MC |
| SRR8240824 | leaf | wild_type | 0.25 | MC |
| SRR8240819 | leaf | wild_type | 1.32 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.69 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.65 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.26 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.62 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.23 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.71 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.86 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.81 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.99 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.29 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.48 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.29 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.48 | MC |
| SRR1761530 | leaf | control | 1.29 | MC |
| SRR1761531 | leaf | control | 3.48 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.74 | MC |
| SRR6417967 | leaf | H2O_control | 3.19 | MC |
| SRR6417968 | leaf | H2O_control | 2.76 | MC |
| SRR6417969 | leaf | H2O_control | 2.81 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.86 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.70 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.72 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.39 | MC |
| SRR6502089 | leaf | control | 2.80 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.28 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.42 | MC |
| SRR6502101 | leaf | control | 2.70 | MC |
| SRR6502102 | leaf | control | 3.30 | MC |
| SRR5856927 | leaf | control | 2.00 | MC |
| SRR5856928 | leaf | control | 1.75 | MC |
| SRR5856929 | leaf | control | 1.19 | MC |
| SRR5856930 | leaf | salt | 1.87 | MC |
| SRR5856931 | leaf | salt | 1.42 | MC |
| SRR5856932 | leaf | salt | 0.51 | MC |
| SRR5856933 | leaf | control | 1.39 | MC |
| SRR5856934 | leaf | control | 1.68 | MC |
| SRR5856935 | leaf | control | 1.85 | MC |
| SRR5856936 | leaf | salt | 0.75 | MC |
| SRR5856938 | leaf | salt | 1.02 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 2.66 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.02 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 7.87 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 5.60 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 5.83 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.47 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.45 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.19 | MC |
| SRR6168973 | leaf | none (control) | 2.24 | MC |
| SRR6168974 | leaf | none (control) | 2.10 | MC |
| SRR6168975 | leaf | none (control) | 0.82 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 5.71 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.47 | MC |
| SRR6168981 | leaf | none (control) | 2.10 | MC |
| SRR8582888 | panicle | AM | 2.06 | MC |
| SRR8582889 | panicle | AM | 0.90 | MC |
| SRR8582890 | panicle | AM | 1.89 | MC |
| SRR8582891 | panicle | PM | 3.47 | MC |
| SRR8582892 | panicle | PM | 6.33 | MC |
| SRR8582893 | panicle | PM | 4.34 | MC |
| SRR4947496 | root | control | 3.49 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.96 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.93 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.40 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.28 | MC |
| SRR5110445 | panicle | Dusk | 4.00 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.57 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.31 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.62 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.58 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.58 | MC |
| SRR1633182 | panicle | WT | 4.01 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.39 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.63 | MC |
| SRR4947478 | root | control | 3.65 | MC |
| SRR4947479 | root | control | 2.02 | MC |
| SRR4947480 | root | control | 3.14 | MC |
| SRR4947481 | root | control | 2.54 | MC |
| SRR4947482 | root | Al | 1.66 | MC |
| SRR4947484 | root | Al | 3.01 | MC |
| SRR4947485 | root | Al | 3.88 | MC |
| SRR4947487 | root | control | 2.55 | MC |
| SRR4947488 | root | control | 2.25 | MC |
| SRR4947489 | root | control | 2.41 | MC |
| SRR4947490 | root | Al | 2.06 | MC |
| SRR4947491 | root | Al | 1.54 | MC |
| SRR4947492 | root | Al | 3.48 | MC |
| SRR4947494 | root | control | 2.63 | MC |
| SRR4947497 | root | control | 2.04 | MC |
| SRR4947498 | root | Al | 4.55 | MC |
| SRR4947499 | root | Al | 2.36 | MC |
| SRR4947500 | root | Al | 5.22 | MC |
| SRR4947501 | root | Al | 3.41 | MC |
| SRR4947502 | root | control | 2.49 | MC |
| SRR4947503 | root | control | 4.47 | MC |
| SRR4947504 | root | control | 4.43 | MC |
| SRR4947505 | root | control | 2.97 | MC |
| SRR4947506 | root | Al | 3.26 | MC |
| SRR4947507 | root | Al | 4.66 | MC |
| SRR4947508 | root | Al | 4.15 | MC |
| SRR4947509 | root | Al | 2.75 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.87 | MC |
| SRR6502094 | root | control | 1.98 | MC |
| SRR6502095 | root | control | 4.95 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.64 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.73 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.90 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.88 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.09 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.14 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.65 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.51 | MC |
| SRR6441554 | seedling | wild_type | 2.21 | MC |
| SRR2154086 | seedling | wt | 4.12 | MC |
| SRR1944583 | seedling | no_treatment | 2.67 | MC |
| SRR358794 | seedling | wt | 4.81 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.39 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.91 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.65 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.78 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.58 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.96 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.79 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.92 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.54 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.86 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.93 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.25 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.08 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.84 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.25 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.24 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.30 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.28 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.64 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.10 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 9.06 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.85 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 5.21 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.36 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.01 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.73 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 5.07 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.74 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.35 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.06 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.55 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.79 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.93 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 5.78 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.50 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.09 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 7.67 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.10 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.64 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.77 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.09 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.16 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.07 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.61 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.90 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.49 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.48 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.58 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.18 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.27 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 3.39 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.12 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.82 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.82 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.84 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.70 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.89 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.72 | MC |