| SRR4457249 | 2nd_leaf | DAH4 | 1.79 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.42 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.71 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.84 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.07 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.28 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.29 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.71 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.91 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.78 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.81 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.25 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.20 | MC |
| SRR358798 | callus | wt | 1.18 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.91 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.03 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.78 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.99 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.39 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR976168 | flag_leaf | wild_type | 1.00 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.32 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.29 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.88 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.43 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.14 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.12 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.46 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.44 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.61 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.01 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.86 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.61 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.00 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.87 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.52 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.73 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.18 | MC |
| SRR8240824 | leaf | wild_type | 0.62 | MC |
| SRR8240826 | leaf | wild_type | 0.90 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.59 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.88 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.11 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.22 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.63 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.58 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.64 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.02 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.00 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.13 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.44 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.54 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.50 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.40 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.69 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.65 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.72 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.97 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.69 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.65 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.72 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.97 | MC |
| SRR1761528 | leaf | drought | 1.69 | MC |
| SRR1761529 | leaf | drought | 3.65 | MC |
| SRR1761530 | leaf | control | 1.72 | MC |
| SRR1761531 | leaf | control | 1.97 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.05 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.48 | MC |
| SRR6417967 | leaf | H2O_control | 1.72 | MC |
| SRR6417968 | leaf | H2O_control | 1.27 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.66 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.06 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.77 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.27 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.19 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.97 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.24 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.75 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.29 | MC |
| SRR6502088 | leaf | control | 2.56 | MC |
| SRR6502089 | leaf | control | 2.48 | MC |
| SRR6502090 | leaf | control | 3.04 | MC |
| SRR6502101 | leaf | control | 0.61 | MC |
| SRR5856927 | leaf | control | 0.53 | MC |
| SRR5856928 | leaf | control | 0.32 | MC |
| SRR5856929 | leaf | control | 0.31 | MC |
| SRR5856930 | leaf | salt | 0.51 | MC |
| SRR5856931 | leaf | salt | 0.52 | MC |
| SRR5856933 | leaf | control | 0.52 | MC |
| SRR5856934 | leaf | control | 0.48 | MC |
| SRR5856935 | leaf | control | 0.55 | MC |
| SRR5856936 | leaf | salt | 0.28 | MC |
| SRR5856937 | leaf | salt | 0.39 | MC |
| SRR5856938 | leaf | salt | 0.34 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.19 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.13 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 1.68 | MC |
| SRR6168973 | leaf | none (control) | 0.36 | MC |
| SRR8582888 | panicle | AM | 0.29 | MC |
| SRR5110431 | panicle | Dawn | 0.55 | MC |
| SRR5110432 | panicle | Dawn | 1.93 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.86 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.67 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.71 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.49 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.51 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.43 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.12 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.13 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 3.54 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.95 | MC |
| SRR5110445 | panicle | Dusk | 1.14 | MC |
| SRR5110446 | panicle | Dusk | 0.65 | MC |
| SRR5110447 | panicle | Dusk | 1.10 | MC |
| SRR5110448 | panicle | Dusk | 0.96 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.82 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.10 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.95 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.44 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.73 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.74 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.32 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.43 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.62 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.14 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.16 | MC |
| SRR5126147 | root | "mock,1_day" | 3.14 | MC |
| SRR5126155 | root | "mock,7_days" | 0.34 | MC |
| SRR5126157 | root | "mock,7_days" | 1.09 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.75 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.54 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.30 | MC |
| SRR5126165 | root | "mock,14_days" | 2.35 | MC |
| SRR5126167 | root | "mock,14_days" | 1.70 | MC |
| SRR5126169 | root | "mock,14_days" | 0.29 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.39 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.42 | MC |
| SRR1213694 | root | wt | 1.30 | MC |
| SRR4947498 | root | Al | 0.69 | MC |
| SRR4947506 | root | Al | 0.45 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.58 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.42 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.37 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.30 | MC |
| SRR6502106 | root | control | 0.65 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.27 | MC |
| SRR6441554 | seedling | wild_type | 0.46 | MC |
| SRR6441555 | seedling | wild_type | 1.32 | MC |
| SRR2154086 | seedling | wt | 3.29 | MC |
| SRR2154084 | seedling | wt | 0.30 | MC |
| SRR2154085 | seedling | wt | 2.20 | MC |
| SRR2154087 | seedling | wt | 1.36 | MC |
| SRR3098741 | seedling | wt | 2.65 | MC |
| SRR3098743 | seedling | wt | 1.40 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.83 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.02 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.61 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.78 | MC |
| SRR1944583 | seedling | no_treatment | 3.26 | MC |
| SRR358792 | seedling | wt | 5.54 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.79 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.14 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.70 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.39 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.08 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.51 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.59 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.10 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.64 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.92 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.69 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.98 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.60 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.06 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.91 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.15 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.95 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.05 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.64 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.68 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.50 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.85 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.27 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.67 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.65 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.02 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.59 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.65 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.71 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.80 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.61 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.89 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.27 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.20 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.90 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.26 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.78 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.46 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.94 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.52 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.93 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.91 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.60 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.78 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |