| SRR4457249 | 2nd_leaf | DAH4 | 2.99 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.47 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.71 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.67 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.17 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.74 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.72 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.22 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.79 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.74 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.60 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.19 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.82 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.30 | MC |
| SRR3745126 | anther | wt | 3.91 | MC |
| SRR3745127 | anther | wt | 3.56 | MC |
| SRR358795 | callus | wt | 6.17 | MC |
| SRR358796 | callus | wt | 4.07 | MC |
| SRR358797 | callus | wt | 3.17 | MC |
| SRR358798 | callus | wt | 4.64 | MC |
| SRR5560727 | caryopsis | wild_type | 2.15 | MC |
| SRR7265412 | coleoptile | 4dA | 2.12 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.22 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.11 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.39 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.82 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.28 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.55 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.79 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.80 | MC |
| SRR7265376 | embryo | 1hA | 1.12 | MC |
| SRR7265377 | embryo | 1hA | 1.86 | MC |
| SRR7265378 | embryo | 1hA | 1.56 | MC |
| SRR7265379 | embryo | 1hN | 1.42 | MC |
| SRR7265380 | embryo | 1hN | 1.56 | MC |
| SRR7265381 | embryo | 1hN | 1.86 | MC |
| SRR7265382 | embryo | 3hA | 2.80 | MC |
| SRR7265383 | embryo | 3hA | 1.65 | MC |
| SRR7265384 | embryo | 3hA | 2.30 | MC |
| SRR7265385 | embryo | 3hN | 1.88 | MC |
| SRR7265386 | embryo | 3hN | 1.69 | MC |
| SRR7265387 | embryo | 3hN | 1.28 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.58 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.57 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.29 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.31 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.70 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.12 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.06 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.95 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.09 | MC |
| SRR8060835 | leaf | wild_type | 0.88 | MC |
| SRR8060836 | leaf | wild_type | 1.78 | MC |
| SRR8060837 | leaf | wild_type | 0.73 | MC |
| SRR8240824 | leaf | wild_type | 0.66 | MC |
| SRR8240825 | leaf | wild_type | 0.46 | MC |
| SRR8240820 | leaf | wild_type | 2.25 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.34 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.47 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.89 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.61 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.74 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.37 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.74 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.37 | MC |
| SRR1761528 | leaf | drought | 1.74 | MC |
| SRR1761529 | leaf | drought | 3.37 | MC |
| SRR504365 | leaf | wt | 3.71 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.53 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.16 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.93 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.12 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.54 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.78 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.78 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.94 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.73 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.27 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.78 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.90 | MC |
| SRR1213692 | leaf | wt | 1.85 | MC |
| SRR1213693 | leaf | wt | 0.76 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.76 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.63 | MC |
| SRR5856927 | leaf | control | 1.59 | MC |
| SRR5856928 | leaf | control | 2.21 | MC |
| SRR5856929 | leaf | control | 1.17 | MC |
| SRR5856930 | leaf | salt | 1.76 | MC |
| SRR5856932 | leaf | salt | 1.67 | MC |
| SRR5856934 | leaf | control | 2.00 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.84 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.48 | MC |
| SRR6168973 | leaf | none (control) | 2.42 | MC |
| SRR6168975 | leaf | none (control) | 1.68 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 5.44 | MC |
| SRR6168979 | leaf | none (control) | 1.45 | MC |
| SRR6168980 | leaf | none (control) | 0.90 | MC |
| SRR8582891 | panicle | PM | 3.38 | MC |
| SRR8582892 | panicle | PM | 5.01 | MC |
| SRR8582893 | panicle | PM | 1.64 | MC |
| SRR5110430 | panicle | Dawn | 3.44 | MC |
| SRR4947496 | root | control | 4.07 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.54 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.23 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.19 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.20 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.68 | MC |
| SRR5110445 | panicle | Dusk | 4.27 | MC |
| SRR5110447 | panicle | Dusk | 4.06 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.43 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.45 | MC |
| SRR5110452 | panicle | Dawn + 14h | 5.34 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.39 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.78 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.20 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.39 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.76 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.67 | MC |
| SRR1213694 | root | wt | 1.12 | MC |
| SRR1213695 | root | wt | 1.50 | MC |
| SRR4947479 | root | control | 3.98 | MC |
| SRR4947480 | root | control | 5.21 | MC |
| SRR4947485 | root | Al | 3.48 | MC |
| SRR4947487 | root | control | 4.22 | MC |
| SRR4947497 | root | control | 4.96 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.69 | MC |
| SRR6441554 | seedling | wild_type | 1.38 | MC |
| SRR6441555 | seedling | wild_type | 0.85 | MC |
| SRR2154086 | seedling | wt | 3.12 | MC |
| SRR2154083 | seedling | wt | 2.33 | MC |
| SRR2154084 | seedling | wt | 3.46 | MC |
| SRR2154085 | seedling | wt | 3.04 | MC |
| SRR2154087 | seedling | wt | 3.06 | MC |
| SRR358791 | seedling | wt | 1.16 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.37 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.48 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.15 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.41 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.58 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.88 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.95 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.05 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.29 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.60 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.35 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.00 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.55 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.94 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.88 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.68 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.68 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.96 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.94 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.53 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.16 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.83 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.47 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.25 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.99 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.48 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.89 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.85 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 9.70 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 8.19 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.97 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.55 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.53 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.84 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 6.65 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 6.27 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.11 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.97 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 6.14 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.71 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.46 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.58 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 5.83 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.81 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.35 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.08 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.04 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.27 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.05 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.54 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.58 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.18 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.77 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.87 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.80 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.62 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.89 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.27 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.81 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.21 | MC |