| SRR4457249 | 2nd_leaf | DAH4 | 3.14 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.19 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.45 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.58 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.50 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.52 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.68 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.55 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.11 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.84 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.23 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.45 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.73 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.02 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.87 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.09 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.68 | MC |
| SRR3745125 | anther | wt | 4.03 | MC |
| SRR3745126 | anther | wt | 3.83 | MC |
| SRR3745127 | anther | wt | 4.26 | MC |
| SRR358795 | callus | wt | 2.70 | MC |
| SRR358796 | callus | wt | 2.14 | MC |
| SRR358797 | callus | wt | 1.66 | MC |
| SRR358798 | callus | wt | 1.14 | MC |
| SRR5560727 | caryopsis | wild_type | 1.33 | MC |
| SRR5560728 | caryopsis | wild_type | 1.36 | MC |
| SRR5560729 | caryopsis | wild_type | 2.04 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.70 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.43 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.00 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.95 | MC |
| SRR7265400 | coleoptile | 2dA | 0.72 | MC |
| SRR7265401 | coleoptile | 2dA | 0.80 | MC |
| SRR7265402 | coleoptile | 2dA | 1.46 | MC |
| SRR7265403 | coleoptile | 2dN | 0.92 | MC |
| SRR7265404 | coleoptile | 2dN | 0.59 | MC |
| SRR7265405 | coleoptile | 2dN | 0.73 | MC |
| SRR7265406 | coleoptile | 3dA | 0.51 | MC |
| SRR7265407 | coleoptile | 3dA | 0.55 | MC |
| SRR7265409 | coleoptile | 3dN | 0.87 | MC |
| SRR7265410 | coleoptile | 3dN | 0.75 | MC |
| SRR7265411 | coleoptile | 3dN | 0.96 | MC |
| SRR7265413 | coleoptile | 4dA | 0.82 | MC |
| SRR7265414 | coleoptile | 4dA | 1.47 | MC |
| SRR7265415 | coleoptile | 4dN | 0.57 | MC |
| SRR7265416 | coleoptile | 4dN | 1.13 | MC |
| SRR7265417 | coleoptile | 4dN | 0.74 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.98 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.76 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.36 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.50 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.48 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.27 | MC |
| SRR7265377 | embryo | 1hA | 0.64 | MC |
| SRR7265378 | embryo | 1hA | 0.43 | MC |
| SRR7265379 | embryo | 1hN | 0.47 | MC |
| SRR7265381 | embryo | 1hN | 0.43 | MC |
| SRR7265384 | embryo | 3hA | 0.50 | MC |
| SRR7265385 | embryo | 3hN | 0.43 | MC |
| SRR7265386 | embryo | 3hN | 0.49 | MC |
| SRR7265387 | embryo | 3hN | 0.52 | MC |
| SRR7265388 | embryo | 12hA | 0.91 | MC |
| SRR7265390 | embryo | 12hA | 0.98 | MC |
| SRR7265391 | embryo | 12hN | 0.72 | MC |
| SRR7265392 | embryo | 12hN | 0.84 | MC |
| SRR7265393 | embryo | 12hN | 0.92 | MC |
| SRR7265394 | embryo | 24hA | 0.58 | MC |
| SRR7265395 | embryo | 24hA | 0.61 | MC |
| SRR7265396 | embryo | 24hA | 0.55 | MC |
| SRR7265397 | embryo | 24hN | 0.77 | MC |
| SRR7265398 | embryo | 24hN | 1.13 | MC |
| SRR7265399 | embryo | 24hN | 1.06 | MC |
| SRR2338868 | endosprem | high_temperature | 1.52 | MC |
| SRR2338869 | endosprem | high_temperature | 2.61 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.86 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.03 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.76 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.59 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.48 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.39 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.10 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.35 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.32 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.83 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.91 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.43 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.10 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.88 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.90 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.94 | MC |
| SRR8240824 | leaf | wild_type | 2.46 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.34 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.96 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.37 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.47 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.07 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.39 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.05 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.21 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.79 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.28 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.25 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.82 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.31 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.47 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.24 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.75 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.57 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.65 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.52 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.60 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.88 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.96 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.36 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.05 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.55 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.22 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.07 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.66 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.58 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.66 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.89 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.47 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 3.50 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.47 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 3.50 | MC |
| SRR1761530 | leaf | control | 3.47 | MC |
| SRR1761531 | leaf | control | 3.50 | MC |
| SRR504365 | leaf | wt | 1.31 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.48 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.82 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.58 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.45 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.83 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.34 | MC |
| SRR1213693 | leaf | wt | 2.71 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.66 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.71 | MC |
| SRR6502100 | leaf | control | 4.03 | MC |
| SRR6502101 | leaf | control | 2.78 | MC |
| SRR6502102 | leaf | control | 2.83 | MC |
| SRR6168975 | leaf | none (control) | 3.47 | MC |
| SRR8582891 | panicle | PM | 3.15 | MC |
| SRR8582892 | panicle | PM | 2.11 | MC |
| SRR8582893 | panicle | PM | 4.11 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.23 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.55 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.21 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.80 | MC |
| SRR5126147 | root | "mock,1_day" | 2.49 | MC |
| SRR5126148 | root | "mock,1_day" | 3.45 | MC |
| SRR5126149 | root | "mock,1_day" | 2.80 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.10 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.60 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.50 | MC |
| SRR5126157 | root | "mock,7_days" | 4.73 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.57 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.87 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.66 | MC |
| SRR5126165 | root | "mock,14_days" | 3.34 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.01 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.83 | MC |
| SRR1213695 | root | wt | 2.07 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.23 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.94 | MC |
| SRR6502106 | root | control | 3.42 | MC |
| SRR6502107 | root | control | 3.04 | MC |
| SRR6502108 | root | control | 3.53 | MC |
| SRR6441554 | seedling | wild_type | 2.61 | MC |
| SRR6441555 | seedling | wild_type | 3.14 | MC |
| SRR2154086 | seedling | wt | 3.60 | MC |
| SRR2154087 | seedling | wt | 3.60 | MC |
| SRR3098741 | seedling | wt | 2.19 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.79 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.60 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.84 | MC |
| SRR358791 | seedling | wt | 1.11 | MC |
| SRR358792 | seedling | wt | 0.89 | MC |
| SRR358793 | seedling | wt | 3.79 | MC |
| SRR358794 | seedling | wt | 2.90 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.11 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.12 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.50 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.30 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.60 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.64 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.70 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.42 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.52 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 5.15 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.91 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.17 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.44 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.33 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.13 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.08 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.73 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.35 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.50 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.66 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.68 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.72 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.45 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.11 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.91 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.88 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.26 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.53 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.17 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.01 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.59 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.96 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.54 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.17 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 3.49 | MC |