| SRR4457251 | 2nd_leaf | DAH4 | 0.29 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.24 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.24 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.01 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.65 | MC |
| SRR358798 | callus | wt | 2.94 | MC |
| SRR5560727 | caryopsis | wild_type | 1.72 | MC |
| SRR5560728 | caryopsis | wild_type | 2.03 | MC |
| SRR5560729 | caryopsis | wild_type | 1.26 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.65 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR7265400 | coleoptile | 2dA | 0.70 | MC |
| SRR7265403 | coleoptile | 2dN | 0.51 | MC |
| SRR7265404 | coleoptile | 2dN | 0.79 | MC |
| SRR7265405 | coleoptile | 2dN | 0.75 | MC |
| SRR7265409 | coleoptile | 3dN | 0.80 | MC |
| SRR7265410 | coleoptile | 3dN | 0.99 | MC |
| SRR7265411 | coleoptile | 3dN | 0.81 | MC |
| SRR7265413 | coleoptile | 4dA | 0.54 | MC |
| SRR7265417 | coleoptile | 4dN | 0.51 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.07 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.45 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.54 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.31 | MC |
| SRR7265378 | embryo | 1hA | 0.54 | MC |
| SRR7265381 | embryo | 1hN | 0.41 | MC |
| SRR7265383 | embryo | 3hA | 0.90 | MC |
| SRR7265385 | embryo | 3hN | 0.66 | MC |
| SRR7265386 | embryo | 3hN | 0.57 | MC |
| SRR7265387 | embryo | 3hN | 0.34 | MC |
| SRR7265388 | embryo | 12hA | 0.77 | MC |
| SRR7265391 | embryo | 12hN | 0.51 | MC |
| SRR7265392 | embryo | 12hN | 0.48 | MC |
| SRR7265393 | embryo | 12hN | 1.15 | MC |
| SRR7265395 | embryo | 24hA | 0.63 | MC |
| SRR7265396 | embryo | 24hA | 1.00 | MC |
| SRR7265398 | embryo | 24hN | 0.93 | MC |
| SRR7265399 | embryo | 24hN | 1.02 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.80 | MC |
| SRR1213691 | flower | wt | 0.62 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.44 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.74 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.53 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.40 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.68 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.87 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.65 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.19 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.38 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.46 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.55 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.88 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.72 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.48 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.86 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.95 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.95 | MC |
| SRR1761529 | leaf | drought | 0.95 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.59 | MC |
| SRR6417969 | leaf | H2O_control | 0.55 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.65 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.78 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.80 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.88 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.29 | MC |
| SRR1213692 | leaf | wt | 0.71 | MC |
| SRR1213693 | leaf | wt | 0.81 | MC |
| SRR5856928 | leaf | control | 0.28 | MC |
| SRR5856929 | leaf | control | 0.29 | MC |
| SRR5856931 | leaf | salt | 0.28 | MC |
| SRR5856933 | leaf | control | 0.45 | MC |
| SRR5856934 | leaf | control | 0.46 | MC |
| SRR5856935 | leaf | control | 0.38 | MC |
| SRR5856937 | leaf | salt | 0.29 | MC |
| SRR5856938 | leaf | salt | 0.42 | MC |
| SRR6168974 | leaf | none (control) | 0.71 | MC |
| SRR6168975 | leaf | none (control) | 1.52 | MC |
| SRR6168980 | leaf | none (control) | 0.61 | MC |
| SRR6168981 | leaf | none (control) | 0.53 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.52 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.20 | MC |
| SRR8582893 | panicle | PM | 0.30 | MC |
| SRR5110429 | panicle | Dawn | 2.29 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.28 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.34 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.69 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.25 | MC |
| SRR5110446 | panicle | Dusk | 1.51 | MC |
| SRR5110448 | panicle | Dusk | 1.17 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.69 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.62 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.81 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.48 | MC |
| SRR5126155 | root | "mock,7_days" | 0.30 | MC |
| SRR5126169 | root | "mock,14_days" | 0.39 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR1213694 | root | wt | 1.22 | MC |
| SRR1213695 | root | wt | 0.86 | MC |
| SRR4947479 | root | control | 0.56 | MC |
| SRR4947483 | root | Al | 0.86 | MC |
| SRR4947485 | root | Al | 0.50 | MC |
| SRR4947487 | root | control | 0.54 | MC |
| SRR4947493 | root | Al | 0.87 | MC |
| SRR4947504 | root | control | 0.64 | MC |
| SRR4947505 | root | control | 0.50 | MC |
| SRR4947507 | root | Al | 1.08 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.51 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.81 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.61 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.35 | MC |
| SRR6441554 | seedling | wild_type | 0.25 | MC |
| SRR2154082 | seedling | wt | 0.61 | MC |
| SRR2154085 | seedling | wt | 0.54 | MC |
| SRR2154087 | seedling | wt | 0.59 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.51 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.49 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.46 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.30 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.49 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.66 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.07 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.14 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.88 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.03 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.49 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.99 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.92 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.88 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.09 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.70 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.21 | MC |