| SRR4457263 | 2nd_leaf | DAH36 | 4.47 | MC |
| SRR3745126 | anther | wt | 2.16 | MC |
| SRR358796 | callus | wt | 7.20 | MC |
| SRR358797 | callus | wt | 8.14 | MC |
| SRR358798 | callus | wt | 8.47 | MC |
| SRR6320473 | carpel | wt | 4.32 | MC |
| SRR5560727 | caryopsis | wild_type | 3.64 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.47 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.39 | MC |
| SRR4947495 | root | control | 2.15 | MC |
| SRR7265416 | coleoptile | 4dN | 4.19 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.46 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.25 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.79 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.64 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.69 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.50 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.36 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.71 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.91 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.27 | MC |
| SRR2338868 | endosprem | high_temperature | 1.93 | MC |
| SRR2338869 | endosprem | high_temperature | 1.58 | MC |
| SRR976168 | flag_leaf | wild_type | 0.86 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.50 | MC |
| SRR8060835 | leaf | wild_type | 1.14 | MC |
| SRR8060836 | leaf | wild_type | 2.64 | MC |
| SRR8060837 | leaf | wild_type | 1.51 | MC |
| SRR8240824 | leaf | wild_type | 1.32 | MC |
| SRR8240825 | leaf | wild_type | 2.00 | MC |
| SRR8240826 | leaf | wild_type | 1.31 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 3.64 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.28 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.56 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.00 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.19 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.08 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.10 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.49 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.66 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.68 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.75 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.52 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.69 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 6.15 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.06 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.76 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.17 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.27 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.76 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.17 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.27 | MC |
| SRR1761529 | leaf | drought | 3.76 | MC |
| SRR1761530 | leaf | control | 4.17 | MC |
| SRR1761531 | leaf | control | 5.27 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.04 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.87 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.45 | MC |
| SRR6417967 | leaf | H2O_control | 1.52 | MC |
| SRR6417968 | leaf | H2O_control | 3.34 | MC |
| SRR6417969 | leaf | H2O_control | 2.46 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.20 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 4.01 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.85 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.03 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.64 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.68 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.91 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.34 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.56 | MC |
| SRR1213692 | leaf | wt | 2.82 | MC |
| SRR1213693 | leaf | wt | 3.54 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.13 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.36 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.73 | MC |
| SRR6502088 | leaf | control | 2.97 | MC |
| SRR6502089 | leaf | control | 3.58 | MC |
| SRR6502090 | leaf | control | 2.37 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.79 | MC |
| SRR6502100 | leaf | control | 2.46 | MC |
| SRR6502101 | leaf | control | 3.90 | MC |
| SRR5856927 | leaf | control | 1.39 | MC |
| SRR5856928 | leaf | control | 1.67 | MC |
| SRR5856929 | leaf | control | 2.16 | MC |
| SRR5856930 | leaf | salt | 0.79 | MC |
| SRR5856931 | leaf | salt | 0.69 | MC |
| SRR5856932 | leaf | salt | 0.65 | MC |
| SRR5856934 | leaf | control | 2.18 | MC |
| SRR5856936 | leaf | salt | 1.13 | MC |
| SRR5856938 | leaf | salt | 1.13 | MC |
| SRR6168973 | leaf | none (control) | 1.85 | MC |
| SRR6168974 | leaf | none (control) | 2.37 | MC |
| SRR6168975 | leaf | none (control) | 1.33 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.96 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.61 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.48 | MC |
| SRR6168979 | leaf | none (control) | 0.80 | MC |
| SRR6168980 | leaf | none (control) | 0.75 | MC |
| SRR6168981 | leaf | none (control) | 0.97 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.50 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.73 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.73 | MC |
| SRR8582888 | panicle | AM | 1.00 | MC |
| SRR8582889 | panicle | AM | 0.79 | MC |
| SRR8582890 | panicle | AM | 2.03 | MC |
| SRR8582891 | panicle | PM | 2.19 | MC |
| SRR8582892 | panicle | PM | 1.59 | MC |
| SRR8582893 | panicle | PM | 1.26 | MC |
| SRR4947496 | root | control | 2.29 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.69 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.82 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.51 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.66 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.57 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 3.77 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.37 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.41 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 4.35 | MC |
| SRR5110447 | panicle | Dusk | 2.54 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.48 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.61 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 3.01 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 4.49 | MC |
| SRR5126147 | root | "mock,1_day" | 2.74 | MC |
| SRR5126148 | root | "mock,1_day" | 1.86 | MC |
| SRR5126149 | root | "mock,1_day" | 3.91 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.57 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.07 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.95 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.49 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.56 | MC |
| SRR1213694 | root | wt | 3.06 | MC |
| SRR4947479 | root | control | 0.59 | MC |
| SRR4947481 | root | control | 3.62 | MC |
| SRR4947482 | root | Al | 2.08 | MC |
| SRR4947484 | root | Al | 1.88 | MC |
| SRR4947485 | root | Al | 3.52 | MC |
| SRR4947487 | root | control | 2.88 | MC |
| SRR4947488 | root | control | 1.13 | MC |
| SRR4947490 | root | Al | 1.45 | MC |
| SRR4947491 | root | Al | 2.67 | MC |
| SRR4947492 | root | Al | 1.40 | MC |
| SRR4947493 | root | Al | 2.07 | MC |
| SRR4947494 | root | control | 3.65 | MC |
| SRR4947497 | root | control | 1.48 | MC |
| SRR4947498 | root | Al | 2.00 | MC |
| SRR4947499 | root | Al | 1.59 | MC |
| SRR4947500 | root | Al | 3.68 | MC |
| SRR4947501 | root | Al | 3.81 | MC |
| SRR4947502 | root | control | 1.61 | MC |
| SRR4947503 | root | control | 1.09 | MC |
| SRR4947505 | root | control | 2.21 | MC |
| SRR4947506 | root | Al | 1.92 | MC |
| SRR4947507 | root | Al | 2.55 | MC |
| SRR4947508 | root | Al | 5.17 | MC |
| SRR4947509 | root | Al | 3.25 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.36 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.47 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.46 | MC |
| SRR6502094 | root | control | 1.65 | MC |
| SRR6502095 | root | control | 2.34 | MC |
| SRR6502096 | root | control | 2.18 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.78 | MC |
| SRR6502105 | root | 100 mM NaCl | 4.13 | MC |
| SRR6502106 | root | control | 4.11 | MC |
| SRR6502107 | root | control | 3.82 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.12 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.22 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.71 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.04 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.55 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.90 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.60 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.86 | MC |
| SRR6441554 | seedling | wild_type | 3.06 | MC |
| SRR6441555 | seedling | wild_type | 2.57 | MC |
| SRR2154086 | seedling | wt | 3.10 | MC |
| SRR2154082 | seedling | wt | 3.37 | MC |
| SRR2154083 | seedling | wt | 2.99 | MC |
| SRR2154084 | seedling | wt | 2.54 | MC |
| SRR2154085 | seedling | wt | 2.24 | MC |
| SRR2154087 | seedling | wt | 2.66 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.39 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.74 | MC |
| SRR1944583 | seedling | no_treatment | 4.35 | MC |
| SRR358793 | seedling | wt | 2.82 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.97 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.02 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.43 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.67 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.17 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.11 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.44 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.41 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.78 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.29 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.76 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.04 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.15 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.65 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.77 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.50 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.50 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.26 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.92 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.25 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.51 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.78 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.77 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.22 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.97 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.68 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.46 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.31 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.81 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.62 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.20 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 6.31 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.30 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.95 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 5.54 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 8.04 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.63 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.65 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.07 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.48 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.47 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.47 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 7.00 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 4.28 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.05 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 7.23 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 7.49 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.62 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.28 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 9.88 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 6.64 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 8.35 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.65 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.48 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.07 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.35 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.30 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.71 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.00 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.75 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.45 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.73 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.79 | MC |