| SRR5560727 | caryopsis | wild_type | 2.88 | MC |
| SRR5560729 | caryopsis | wild_type | 2.05 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.75 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.45 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.16 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.77 | MC |
| SRR7265400 | coleoptile | 2dA | 1.24 | MC |
| SRR7265401 | coleoptile | 2dA | 0.94 | MC |
| SRR7265402 | coleoptile | 2dA | 1.42 | MC |
| SRR7265406 | coleoptile | 3dA | 1.77 | MC |
| SRR7265407 | coleoptile | 3dA | 0.99 | MC |
| SRR7265408 | coleoptile | 3dA | 0.93 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.60 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.54 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.65 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.44 | MC |
| SRR8240826 | leaf | wild_type | 0.37 | MC |
| SRR8240818 | leaf | wild_type | 1.10 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.64 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.70 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.83 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.97 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.56 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.54 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.70 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.49 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.34 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.64 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.81 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.28 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.01 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.71 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.99 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.58 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.85 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.09 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.76 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.09 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.76 | MC |
| SRR1761528 | leaf | drought | 1.09 | MC |
| SRR1761530 | leaf | control | 2.76 | MC |
| SRR504365 | leaf | wt | 1.42 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.88 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.74 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.87 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.84 | MC |
| SRR1213693 | leaf | wt | 0.25 | MC |
| SRR6502089 | leaf | control | 2.13 | MC |
| SRR6502090 | leaf | control | 3.17 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.85 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.96 | MC |
| SRR6168979 | leaf | none (control) | 0.84 | MC |
| SRR8582891 | panicle | PM | 3.36 | MC |
| SRR8582892 | panicle | PM | 0.98 | MC |
| SRR8582893 | panicle | PM | 4.65 | MC |
| SRR5110429 | panicle | Dawn | 3.22 | MC |
| SRR5110430 | panicle | Dawn | 1.51 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.05 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.97 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.12 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.14 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.69 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.29 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.48 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.88 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.02 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.66 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.78 | MC |
| SRR5110445 | panicle | Dusk | 1.97 | MC |
| SRR5110446 | panicle | Dusk | 1.50 | MC |
| SRR5110447 | panicle | Dusk | 1.71 | MC |
| SRR5110448 | panicle | Dusk | 1.06 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.31 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.06 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.37 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.32 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.96 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.23 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.99 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.51 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.70 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.17 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.92 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.56 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.09 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.51 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.32 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.98 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.55 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.99 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.35 | MC |
| SRR1213694 | root | wt | 1.79 | MC |
| SRR1213695 | root | wt | 0.15 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.96 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.42 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.50 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.88 | MC |
| SRR358791 | seedling | wt | 5.43 | MC |
| SRR358792 | seedling | wt | 1.88 | MC |
| SRR358793 | seedling | wt | 3.88 | MC |
| SRR358794 | seedling | wt | 4.57 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.83 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.18 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.90 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.42 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.37 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.11 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.16 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.38 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.68 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.97 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.66 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.39 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.41 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.53 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.30 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.36 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.33 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.57 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.60 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.92 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.05 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.72 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.69 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.15 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.83 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.85 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 6.21 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.93 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.75 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.69 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.82 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.51 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.75 | MC |