| SRR4457250 | 2nd_leaf | DAH4 | 1.30 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.18 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.42 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.85 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.90 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.51 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.16 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.93 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.34 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.53 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.86 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.34 | MC |
| SRR3745127 | anther | wt | 0.77 | MC |
| SRR6320498 | carpel | wt | 1.45 | MC |
| SRR5560727 | caryopsis | wild_type | 0.91 | MC |
| SRR5560728 | caryopsis | wild_type | 1.60 | MC |
| SRR5560729 | caryopsis | wild_type | 0.52 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.39 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.30 | MC |
| SRR7265401 | coleoptile | 2dA | 1.70 | MC |
| SRR7265402 | coleoptile | 2dA | 1.74 | MC |
| SRR7265404 | coleoptile | 2dN | 1.69 | MC |
| SRR7265405 | coleoptile | 2dN | 2.82 | MC |
| SRR7265408 | coleoptile | 3dA | 1.34 | MC |
| SRR7265410 | coleoptile | 3dN | 2.80 | MC |
| SRR7265414 | coleoptile | 4dA | 2.23 | MC |
| SRR7265415 | coleoptile | 4dN | 3.38 | MC |
| SRR7265416 | coleoptile | 4dN | 3.21 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.72 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.29 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.58 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.90 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.00 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.67 | MC |
| SRR7265382 | embryo | 3hA | 2.55 | MC |
| SRR7265383 | embryo | 3hA | 3.80 | MC |
| SRR7265384 | embryo | 3hA | 2.47 | MC |
| SRR7265386 | embryo | 3hN | 2.11 | MC |
| SRR7265387 | embryo | 3hN | 2.27 | MC |
| SRR7265388 | embryo | 12hA | 3.65 | MC |
| SRR7265390 | embryo | 12hA | 2.33 | MC |
| SRR7265391 | embryo | 12hN | 2.44 | MC |
| SRR7265392 | embryo | 12hN | 2.77 | MC |
| SRR7265398 | embryo | 24hN | 2.86 | MC |
| SRR7265399 | embryo | 24hN | 2.46 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.30 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.78 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.85 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.01 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.89 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.34 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.61 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.94 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.14 | MC |
| SRR1213691 | flower | wt | 0.76 | MC |
| SRR8060836 | leaf | wild_type | 1.06 | MC |
| SRR8240824 | leaf | wild_type | 0.30 | MC |
| SRR8240826 | leaf | wild_type | 1.27 | MC |
| SRR8240820 | leaf | wild_type | 0.28 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.45 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.87 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.38 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.91 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.25 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.98 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.72 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.40 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.17 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.97 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.76 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.13 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.32 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.58 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.59 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.20 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.86 | MC |
| SRR1761528 | leaf | drought | 3.03 | MC |
| SRR504365 | leaf | wt | 0.94 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.85 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.94 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.42 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.06 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.70 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.34 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.36 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.99 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.96 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.93 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.28 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.07 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.23 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.85 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.84 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.45 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.83 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.29 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.57 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.62 | MC |
| SRR1213692 | leaf | wt | 3.70 | MC |
| SRR1213693 | leaf | wt | 1.59 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.75 | MC |
| SRR6502089 | leaf | control | 0.99 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.42 | MC |
| SRR5856927 | leaf | control | 0.41 | MC |
| SRR5856928 | leaf | control | 0.38 | MC |
| SRR5856930 | leaf | salt | 0.17 | MC |
| SRR5856933 | leaf | control | 0.26 | MC |
| SRR5856935 | leaf | control | 0.69 | MC |
| SRR5856936 | leaf | salt | 1.71 | MC |
| SRR5856937 | leaf | salt | 1.21 | MC |
| SRR5856938 | leaf | salt | 0.19 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 3.86 | MC |
| SRR6168973 | leaf | none (control) | 2.00 | MC |
| SRR6168974 | leaf | none (control) | 0.88 | MC |
| SRR6168975 | leaf | none (control) | 0.39 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.68 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR6168980 | leaf | none (control) | 0.82 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.83 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.50 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.54 | MC |
| SRR8582893 | panicle | PM | 0.53 | MC |
| SRR5110429 | panicle | Dawn | 1.22 | MC |
| SRR5110432 | panicle | Dawn | 0.97 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.31 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.00 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.71 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.03 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.52 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.56 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.32 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.17 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.77 | MC |
| SRR5110445 | panicle | Dusk | 2.30 | MC |
| SRR5110447 | panicle | Dusk | 1.08 | MC |
| SRR5110448 | panicle | Dusk | 1.96 | MC |
| SRR5110449 | panicle | Dawn + 14h | 6.24 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.04 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.80 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.76 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.36 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.29 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.49 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.31 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.36 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.85 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.53 | MC |
| SRR5126153 | root | "mock,7_days" | 0.30 | MC |
| SRR5126155 | root | "mock,7_days" | 0.35 | MC |
| SRR5126157 | root | "mock,7_days" | 0.91 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.39 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.45 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.95 | MC |
| SRR5126165 | root | "mock,14_days" | 1.08 | MC |
| SRR5126167 | root | "mock,14_days" | 0.35 | MC |
| SRR5126169 | root | "mock,14_days" | 0.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.53 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.51 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.10 | MC |
| SRR4947497 | root | control | 5.82 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.96 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.11 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.40 | MC |
| SRR6502096 | root | control | 3.82 | MC |
| SRR6502106 | root | control | 2.80 | MC |
| SRR6502108 | root | control | 4.56 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.89 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.28 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.56 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.15 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.84 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.95 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.69 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.87 | MC |
| SRR6441554 | seedling | wild_type | 1.39 | MC |
| SRR2154086 | seedling | wt | 0.57 | MC |
| SRR2154082 | seedling | wt | 2.26 | MC |
| SRR2154083 | seedling | wt | 2.06 | MC |
| SRR2154084 | seedling | wt | 0.38 | MC |
| SRR2154085 | seedling | wt | 0.97 | MC |
| SRR2154087 | seedling | wt | 1.47 | MC |
| SRR3098742 | seedling | wt | 0.16 | MC |
| SRR3098743 | seedling | wt | 0.62 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.47 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.64 | MC |
| SRR358794 | seedling | wt | 1.28 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.52 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.69 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.97 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.77 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.92 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.81 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.96 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.66 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.40 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.81 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.04 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.27 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.91 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 4.45 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.65 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 1.91 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.94 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.75 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.43 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.14 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.35 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.20 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.56 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 3.79 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.29 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.96 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.48 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.55 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.05 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 3.20 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.20 | MC |