| SRR4457253 | 2nd_leaf | DAH12 | 0.66 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.89 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.07 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.44 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.60 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.60 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.63 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.28 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.03 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.21 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.82 | MC |
| SRR3745127 | anther | wt | 2.10 | MC |
| SRR358796 | callus | wt | 3.58 | MC |
| SRR358797 | callus | wt | 4.32 | MC |
| SRR358798 | callus | wt | 4.53 | MC |
| SRR5560728 | caryopsis | wild_type | 0.35 | MC |
| SRR7265400 | coleoptile | 2dA | 0.64 | MC |
| SRR7265406 | coleoptile | 3dA | 0.90 | MC |
| SRR7265407 | coleoptile | 3dA | 0.64 | MC |
| SRR7265408 | coleoptile | 3dA | 0.76 | MC |
| SRR7265413 | coleoptile | 4dA | 3.92 | MC |
| SRR7265414 | coleoptile | 4dA | 0.93 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.89 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.90 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.78 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.77 | MC |
| SRR7265378 | embryo | 1hA | 2.85 | MC |
| SRR7265379 | embryo | 1hN | 1.26 | MC |
| SRR7265380 | embryo | 1hN | 0.64 | MC |
| SRR7265381 | embryo | 1hN | 1.40 | MC |
| SRR7265382 | embryo | 3hA | 0.88 | MC |
| SRR7265383 | embryo | 3hA | 1.39 | MC |
| SRR7265385 | embryo | 3hN | 1.15 | MC |
| SRR7265386 | embryo | 3hN | 1.21 | MC |
| SRR7265387 | embryo | 3hN | 0.70 | MC |
| SRR7265389 | embryo | 12hA | 1.06 | MC |
| SRR7265390 | embryo | 12hA | 0.87 | MC |
| SRR7265392 | embryo | 12hN | 0.56 | MC |
| SRR7265393 | embryo | 12hN | 0.62 | MC |
| SRR7265396 | embryo | 24hA | 0.50 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.92 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.83 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.90 | MC |
| SRR4457248 | flag_leaf | DAH44 | 4.31 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.70 | MC |
| SRR1213691 | flower | wt | 0.43 | MC |
| SRR8240820 | leaf | wild_type | 0.71 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.66 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.32 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.62 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.06 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.87 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.65 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.52 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.85 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.15 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.31 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.91 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.28 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.37 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.31 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.55 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.46 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.68 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.47 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.59 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.01 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.75 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.63 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.35 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.53 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.31 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.42 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.50 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.40 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.15 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.06 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.64 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.15 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.06 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.64 | MC |
| SRR1761528 | leaf | drought | 1.15 | MC |
| SRR1761530 | leaf | control | 1.06 | MC |
| SRR1761531 | leaf | control | 0.64 | MC |
| SRR504365 | leaf | wt | 0.87 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.73 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.15 | MC |
| SRR6417967 | leaf | H2O_control | 1.13 | MC |
| SRR6417968 | leaf | H2O_control | 1.43 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.04 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.62 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.71 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.73 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.91 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.42 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.84 | MC |
| SRR1213692 | leaf | wt | 2.42 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.45 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.24 | MC |
| SRR6502089 | leaf | control | 1.54 | MC |
| SRR6502090 | leaf | control | 0.76 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.69 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.41 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.67 | MC |
| SRR6502101 | leaf | control | 0.96 | MC |
| SRR6502102 | leaf | control | 2.12 | MC |
| SRR6168974 | leaf | none (control) | 1.58 | MC |
| SRR6168975 | leaf | none (control) | 3.34 | MC |
| SRR8582889 | panicle | AM | 0.85 | MC |
| SRR8582890 | panicle | AM | 1.21 | MC |
| SRR8582892 | panicle | PM | 5.74 | MC |
| SRR5110430 | panicle | Dawn | 1.30 | MC |
| SRR5110431 | panicle | Dawn | 3.76 | MC |
| SRR4947496 | root | control | 0.51 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.62 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.72 | MC |
| SRR5110448 | panicle | Dusk | 4.67 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.70 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.60 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.45 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.36 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.55 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.18 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.27 | MC |
| SRR1633182 | panicle | WT | 1.34 | MC |
| SRR1633185 | panicle | WT | 1.55 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.19 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.02 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.45 | MC |
| SRR5126167 | root | "mock,14_days" | 1.42 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.94 | MC |
| SRR4947478 | root | control | 0.84 | MC |
| SRR4947483 | root | Al | 1.23 | MC |
| SRR4947484 | root | Al | 0.80 | MC |
| SRR4947487 | root | control | 0.98 | MC |
| SRR4947489 | root | control | 0.52 | MC |
| SRR4947491 | root | Al | 0.85 | MC |
| SRR4947497 | root | control | 0.60 | MC |
| SRR4947499 | root | Al | 0.54 | MC |
| SRR4947507 | root | Al | 1.56 | MC |
| SRR4947508 | root | Al | 0.57 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.69 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.25 | MC |
| SRR6502094 | root | control | 1.16 | MC |
| SRR6502095 | root | control | 0.53 | MC |
| SRR6502096 | root | control | 0.41 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.71 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.31 | MC |
| SRR6441555 | seedling | wild_type | 0.28 | MC |
| SRR2154083 | seedling | wt | 1.47 | MC |
| SRR3098742 | seedling | wt | 1.35 | MC |
| SRR3098743 | seedling | wt | 1.25 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.38 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.00 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.13 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.84 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.21 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.20 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.35 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.09 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.70 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.04 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.31 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.48 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.29 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.41 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.61 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.89 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.53 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.00 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.71 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.85 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.83 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.36 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.90 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.59 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.40 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.13 | MC |