| SRR4457251 | 2nd_leaf | DAH4 | 0.26 | MC |
| SRR6320473 | carpel | wt | 2.02 | MC |
| SRR6320498 | carpel | wt | 2.91 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR7265400 | coleoptile | 2dA | 2.05 | MC |
| SRR7265401 | coleoptile | 2dA | 1.45 | MC |
| SRR7265402 | coleoptile | 2dA | 1.54 | MC |
| SRR7265403 | coleoptile | 2dN | 1.77 | MC |
| SRR7265404 | coleoptile | 2dN | 1.01 | MC |
| SRR7265405 | coleoptile | 2dN | 1.85 | MC |
| SRR7265406 | coleoptile | 3dA | 2.69 | MC |
| SRR7265407 | coleoptile | 3dA | 2.71 | MC |
| SRR7265408 | coleoptile | 3dA | 2.31 | MC |
| SRR7265409 | coleoptile | 3dN | 2.71 | MC |
| SRR7265410 | coleoptile | 3dN | 2.08 | MC |
| SRR7265411 | coleoptile | 3dN | 2.34 | MC |
| SRR7265412 | coleoptile | 4dA | 1.88 | MC |
| SRR7265413 | coleoptile | 4dA | 2.33 | MC |
| SRR7265414 | coleoptile | 4dA | 1.46 | MC |
| SRR7265415 | coleoptile | 4dN | 1.94 | MC |
| SRR7265416 | coleoptile | 4dN | 2.45 | MC |
| SRR7265417 | coleoptile | 4dN | 1.13 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.72 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.07 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.27 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR7265388 | embryo | 12hA | 2.09 | MC |
| SRR7265389 | embryo | 12hA | 2.81 | MC |
| SRR7265390 | embryo | 12hA | 2.02 | MC |
| SRR7265391 | embryo | 12hN | 1.11 | MC |
| SRR7265392 | embryo | 12hN | 0.87 | MC |
| SRR7265393 | embryo | 12hN | 0.79 | MC |
| SRR7265394 | embryo | 24hA | 1.79 | MC |
| SRR7265395 | embryo | 24hA | 2.14 | MC |
| SRR7265396 | embryo | 24hA | 1.47 | MC |
| SRR7265397 | embryo | 24hN | 2.90 | MC |
| SRR7265398 | embryo | 24hN | 1.06 | MC |
| SRR7265399 | embryo | 24hN | 1.49 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.75 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.34 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.87 | MC |
| SRR8060837 | leaf | wild_type | 0.42 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.50 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.80 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.67 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.16 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.42 | MC |
| SRR504365 | leaf | wt | 0.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.38 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.42 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.32 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.42 | MC |
| SRR1213693 | leaf | wt | 1.63 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.77 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.56 | MC |
| SRR6502102 | leaf | control | 0.45 | MC |
| SRR5856928 | leaf | control | 0.85 | MC |
| SRR5856929 | leaf | control | 0.32 | MC |
| SRR5856931 | leaf | salt | 0.70 | MC |
| SRR5856932 | leaf | salt | 0.33 | MC |
| SRR5856933 | leaf | control | 0.81 | MC |
| SRR5856934 | leaf | control | 0.29 | MC |
| SRR5856935 | leaf | control | 1.15 | MC |
| SRR5856936 | leaf | salt | 0.14 | MC |
| SRR5856937 | leaf | salt | 0.71 | MC |
| SRR5856938 | leaf | salt | 0.20 | MC |
| SRR6168973 | leaf | none (control) | 0.27 | MC |
| SRR6168974 | leaf | none (control) | 0.47 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.66 | MC |
| SRR6168980 | leaf | none (control) | 0.89 | MC |
| SRR6168981 | leaf | none (control) | 0.43 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.00 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.06 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.79 | MC |
| SRR5110431 | panicle | Dawn | 0.35 | MC |
| SRR5110432 | panicle | Dawn | 0.96 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.30 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110446 | panicle | Dusk | 0.60 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.30 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.95 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.67 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.22 | MC |
| SRR1633182 | panicle | WT | 1.03 | MC |
| SRR1633185 | panicle | WT | 3.13 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.58 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.59 | MC |
| SRR5126147 | root | "mock,1_day" | 0.79 | MC |
| SRR5126148 | root | "mock,1_day" | 1.21 | MC |
| SRR5126149 | root | "mock,1_day" | 4.88 | MC |
| SRR5126153 | root | "mock,7_days" | 1.50 | MC |
| SRR5126155 | root | "mock,7_days" | 2.17 | MC |
| SRR5126157 | root | "mock,7_days" | 1.98 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.76 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.77 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.11 | MC |
| SRR5126165 | root | "mock,14_days" | 2.86 | MC |
| SRR5126167 | root | "mock,14_days" | 1.77 | MC |
| SRR5126169 | root | "mock,14_days" | 1.82 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.84 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.19 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.15 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.38 | MC |
| SRR1213695 | root | wt | 1.56 | MC |
| SRR4947481 | root | control | 0.92 | MC |
| SRR4947482 | root | Al | 0.62 | MC |
| SRR4947483 | root | Al | 0.72 | MC |
| SRR4947485 | root | Al | 0.57 | MC |
| SRR4947491 | root | Al | 0.75 | MC |
| SRR4947504 | root | control | 0.58 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.61 | MC |
| SRR6502095 | root | control | 1.30 | MC |
| SRR6502096 | root | control | 0.78 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.89 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502106 | root | control | 0.65 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.74 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.94 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.23 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.66 | MC |
| SRR6441555 | seedling | wild_type | 0.29 | MC |
| SRR2154082 | seedling | wt | 0.33 | MC |
| SRR2154083 | seedling | wt | 0.61 | MC |
| SRR2154084 | seedling | wt | 0.53 | MC |
| SRR3098741 | seedling | wt | 0.71 | MC |
| SRR3098742 | seedling | wt | 0.20 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.58 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.45 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.89 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.84 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.24 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.41 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.52 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.77 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.33 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.73 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.29 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.16 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.67 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.70 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.00 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.48 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.93 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.54 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.58 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.63 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.51 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.53 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.67 | MC |