| SRR4457250 | 2nd_leaf | DAH4 | 1.03 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.49 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.38 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.94 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.53 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.92 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.46 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.56 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.22 | MC |
| SRR358795 | callus | wt | 3.02 | MC |
| SRR6320498 | carpel | wt | 2.63 | MC |
| SRR5560727 | caryopsis | wild_type | 0.83 | MC |
| SRR5560728 | caryopsis | wild_type | 1.48 | MC |
| SRR5560729 | caryopsis | wild_type | 1.79 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.25 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.29 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.39 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.03 | MC |
| SRR7265410 | coleoptile | 3dN | 2.94 | MC |
| SRR7265415 | coleoptile | 4dN | 2.51 | MC |
| SRR7265417 | coleoptile | 4dN | 2.99 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.43 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.87 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.65 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.78 | MC |
| SRR7265376 | embryo | 1hA | 2.60 | MC |
| SRR7265377 | embryo | 1hA | 2.97 | MC |
| SRR7265379 | embryo | 1hN | 1.97 | MC |
| SRR7265380 | embryo | 1hN | 3.35 | MC |
| SRR7265381 | embryo | 1hN | 2.52 | MC |
| SRR7265385 | embryo | 3hN | 1.96 | MC |
| SRR7265387 | embryo | 3hN | 2.37 | MC |
| SRR7265391 | embryo | 12hN | 4.36 | MC |
| SRR7265392 | embryo | 12hN | 4.05 | MC |
| SRR7265393 | embryo | 12hN | 3.22 | MC |
| SRR7265396 | embryo | 24hA | 3.17 | MC |
| SRR7265397 | embryo | 24hN | 4.02 | MC |
| SRR7265398 | embryo | 24hN | 4.57 | MC |
| SRR7265399 | embryo | 24hN | 4.37 | MC |
| SRR2338867 | endosprem | control | 1.37 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.55 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.81 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.62 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.64 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.71 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.78 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.05 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.97 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.99 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.75 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.74 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.63 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.85 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.93 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.90 | MC |
| SRR1213691 | flower | wt | 1.69 | MC |
| SRR8060835 | leaf | wild_type | 0.33 | MC |
| SRR8060836 | leaf | wild_type | 1.46 | MC |
| SRR8060837 | leaf | wild_type | 0.27 | MC |
| SRR8240825 | leaf | wild_type | 0.31 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.50 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 3.00 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.04 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.08 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.40 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.14 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.36 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.69 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.13 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.59 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.64 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.60 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.80 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.39 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.50 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.74 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.80 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.45 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.90 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.26 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.07 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.97 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.21 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.13 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.69 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.39 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.84 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.16 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.54 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.10 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.87 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.47 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.96 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.60 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.52 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.93 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.96 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.93 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.96 | MC |
| SRR1761528 | leaf | drought | 3.93 | MC |
| SRR1761529 | leaf | drought | 2.96 | MC |
| SRR6417968 | leaf | H2O_control | 0.75 | MC |
| SRR6417969 | leaf | H2O_control | 0.56 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.29 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.37 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.28 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.03 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.72 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.52 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.83 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.69 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.64 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.88 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.18 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.57 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.41 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.78 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.47 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.82 | MC |
| SRR1213692 | leaf | wt | 1.67 | MC |
| SRR1213693 | leaf | wt | 1.90 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.55 | MC |
| SRR5856928 | leaf | control | 0.41 | MC |
| SRR5856929 | leaf | control | 1.04 | MC |
| SRR5856933 | leaf | control | 0.89 | MC |
| SRR5856934 | leaf | control | 0.74 | MC |
| SRR5856935 | leaf | control | 1.11 | MC |
| SRR5856936 | leaf | salt | 0.37 | MC |
| SRR5856937 | leaf | salt | 0.31 | MC |
| SRR5856938 | leaf | salt | 0.57 | MC |
| SRR6168979 | leaf | none (control) | 1.55 | MC |
| SRR6168981 | leaf | none (control) | 0.73 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.49 | MC |
| SRR8582889 | panicle | AM | 0.15 | MC |
| SRR8582892 | panicle | PM | 1.42 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.63 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.19 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.73 | MC |
| SRR5110447 | panicle | Dusk | 0.55 | MC |
| SRR5110448 | panicle | Dusk | 0.82 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.27 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.49 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.03 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.49 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.81 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.66 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.90 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.23 | MC |
| SRR1633182 | panicle | WT | 1.16 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.35 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.49 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.63 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.41 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.18 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.83 | MC |
| SRR5126148 | root | "mock,1_day" | 0.75 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.06 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.00 | MC |
| SRR5126155 | root | "mock,7_days" | 0.56 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.37 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.56 | MC |
| SRR5126165 | root | "mock,14_days" | 0.87 | MC |
| SRR5126167 | root | "mock,14_days" | 0.92 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.22 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.79 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.85 | MC |
| SRR1213694 | root | wt | 0.57 | MC |
| SRR1213695 | root | wt | 2.82 | MC |
| SRR4947480 | root | control | 0.53 | MC |
| SRR4947507 | root | Al | 0.70 | MC |
| SRR6502095 | root | control | 0.56 | MC |
| SRR2154084 | seedling | wt | 0.42 | MC |
| SRR2154085 | seedling | wt | 1.15 | MC |
| SRR2154087 | seedling | wt | 0.94 | MC |
| SRR3098741 | seedling | wt | 0.64 | MC |
| SRR3098742 | seedling | wt | 0.17 | MC |
| SRR3098743 | seedling | wt | 0.53 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.00 | MC |
| SRR358791 | seedling | wt | 1.35 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.91 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.89 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.17 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.96 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.29 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.46 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.59 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.24 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.67 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.34 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.57 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.20 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.67 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.25 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.09 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.69 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.98 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.25 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.01 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.23 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.33 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.51 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.84 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.79 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 2.39 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.69 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.90 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.61 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.77 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.98 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.29 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.62 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.64 | MC |