| SRR4457249 | 2nd_leaf | DAH4 | 0.63 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.35 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.20 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.20 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.14 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.79 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.67 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.70 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.53 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.60 | MC |
| SRR358798 | callus | wt | 5.32 | MC |
| SRR5560727 | caryopsis | wild_type | 0.63 | MC |
| SRR5560729 | caryopsis | wild_type | 0.80 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.49 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR7265400 | coleoptile | 2dA | 1.74 | MC |
| SRR7265401 | coleoptile | 2dA | 2.17 | MC |
| SRR7265402 | coleoptile | 2dA | 1.28 | MC |
| SRR7265403 | coleoptile | 2dN | 2.86 | MC |
| SRR7265406 | coleoptile | 3dA | 0.97 | MC |
| SRR7265407 | coleoptile | 3dA | 1.03 | MC |
| SRR7265408 | coleoptile | 3dA | 1.09 | MC |
| SRR7265409 | coleoptile | 3dN | 0.95 | MC |
| SRR7265410 | coleoptile | 3dN | 1.74 | MC |
| SRR7265411 | coleoptile | 3dN | 1.20 | MC |
| SRR7265412 | coleoptile | 4dA | 2.63 | MC |
| SRR7265413 | coleoptile | 4dA | 4.59 | MC |
| SRR7265414 | coleoptile | 4dA | 3.64 | MC |
| SRR7265415 | coleoptile | 4dN | 1.03 | MC |
| SRR7265416 | coleoptile | 4dN | 2.24 | MC |
| SRR7265417 | coleoptile | 4dN | 1.27 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.00 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.52 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.99 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.86 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.34 | MC |
| SRR7265376 | embryo | 1hA | 2.11 | MC |
| SRR7265377 | embryo | 1hA | 1.87 | MC |
| SRR7265378 | embryo | 1hA | 2.39 | MC |
| SRR7265379 | embryo | 1hN | 2.04 | MC |
| SRR7265380 | embryo | 1hN | 2.33 | MC |
| SRR7265381 | embryo | 1hN | 1.94 | MC |
| SRR7265385 | embryo | 3hN | 3.86 | MC |
| SRR7265386 | embryo | 3hN | 2.25 | MC |
| SRR7265387 | embryo | 3hN | 1.67 | MC |
| SRR7265388 | embryo | 12hA | 2.93 | MC |
| SRR7265389 | embryo | 12hA | 4.09 | MC |
| SRR7265390 | embryo | 12hA | 3.54 | MC |
| SRR7265392 | embryo | 12hN | 3.68 | MC |
| SRR7265393 | embryo | 12hN | 3.69 | MC |
| SRR7265394 | embryo | 24hA | 3.09 | MC |
| SRR7265395 | embryo | 24hA | 3.42 | MC |
| SRR7265396 | embryo | 24hA | 4.53 | MC |
| SRR7265398 | embryo | 24hN | 3.78 | MC |
| SRR7265399 | embryo | 24hN | 2.11 | MC |
| SRR2338869 | endosprem | high_temperature | 0.68 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.37 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.39 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.78 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.40 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.83 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.37 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.89 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.13 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.00 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.39 | MC |
| SRR1213691 | flower | wt | 0.91 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.61 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.72 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.66 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.94 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.60 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.10 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.22 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.39 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.58 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.73 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.20 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.72 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.81 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.83 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.90 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.57 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.61 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.76 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.56 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.30 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.36 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.76 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.01 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.90 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.42 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.65 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.60 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.82 | MC |
| SRR504365 | leaf | wt | 0.93 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.38 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.06 | MC |
| SRR6417968 | leaf | H2O_control | 0.64 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.46 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.36 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.26 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.49 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.85 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.27 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.35 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.34 | MC |
| SRR1213692 | leaf | wt | 0.66 | MC |
| SRR1213693 | leaf | wt | 0.29 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.59 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.81 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.58 | MC |
| SRR6168979 | leaf | none (control) | 0.48 | MC |
| SRR6168980 | leaf | none (control) | 0.17 | MC |
| SRR8582888 | panicle | AM | 0.66 | MC |
| SRR8582889 | panicle | AM | 0.22 | MC |
| SRR8582891 | panicle | PM | 0.91 | MC |
| SRR8582892 | panicle | PM | 1.49 | MC |
| SRR8582893 | panicle | PM | 0.88 | MC |
| SRR5110431 | panicle | Dawn | 0.53 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.75 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110447 | panicle | Dusk | 0.45 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.60 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.43 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.65 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.63 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.36 | MC |
| SRR1633182 | panicle | WT | 2.12 | MC |
| SRR1633185 | panicle | WT | 3.65 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.21 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.38 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.82 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.20 | MC |
| SRR5126147 | root | "mock,1_day" | 1.71 | MC |
| SRR5126148 | root | "mock,1_day" | 0.41 | MC |
| SRR5126149 | root | "mock,1_day" | 0.78 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.08 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.07 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.77 | MC |
| SRR5126153 | root | "mock,7_days" | 1.05 | MC |
| SRR5126155 | root | "mock,7_days" | 0.56 | MC |
| SRR5126157 | root | "mock,7_days" | 1.11 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.81 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.41 | MC |
| SRR5126165 | root | "mock,14_days" | 1.72 | MC |
| SRR5126167 | root | "mock,14_days" | 0.90 | MC |
| SRR5126169 | root | "mock,14_days" | 0.67 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.71 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.04 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.35 | MC |
| SRR1213694 | root | wt | 0.48 | MC |
| SRR1213695 | root | wt | 0.60 | MC |
| SRR4947480 | root | control | 0.94 | MC |
| SRR4947491 | root | Al | 0.53 | MC |
| SRR4947497 | root | control | 0.62 | MC |
| SRR4947502 | root | control | 0.62 | MC |
| SRR4947509 | root | Al | 0.52 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.63 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.93 | MC |
| SRR6502094 | root | control | 0.43 | MC |
| SRR6502095 | root | control | 1.22 | MC |
| SRR6502096 | root | control | 0.75 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.87 | MC |
| SRR6502107 | root | control | 0.35 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.57 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.51 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.50 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.70 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.03 | MC |
| SRR2154084 | seedling | wt | 0.35 | MC |
| SRR3098741 | seedling | wt | 0.57 | MC |
| SRR3098742 | seedling | wt | 0.39 | MC |
| SRR3098743 | seedling | wt | 0.61 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.59 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.93 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.40 | MC |
| SRR358791 | seedling | wt | 1.86 | MC |
| SRR358792 | seedling | wt | 0.90 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.71 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.85 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.82 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.45 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.44 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.42 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.27 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.40 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.44 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.10 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.65 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.44 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.83 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.73 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.87 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.54 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.44 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.33 | MC |