| SRR358798 | callus | wt | 1.00 | MC |
| SRR6320498 | carpel | wt | 5.14 | MC |
| SRR5560729 | caryopsis | wild_type | 2.75 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.79 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.65 | MC |
| SRR7265401 | coleoptile | 2dA | 2.68 | MC |
| SRR7265408 | coleoptile | 3dA | 1.60 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.46 | MC |
| SRR7265376 | embryo | 1hA | 3.38 | MC |
| SRR7265380 | embryo | 1hN | 2.67 | MC |
| SRR7265381 | embryo | 1hN | 2.52 | MC |
| SRR7265389 | embryo | 12hA | 4.63 | MC |
| SRR7265394 | embryo | 24hA | 3.66 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.33 | MC |
| SRR8060836 | leaf | wild_type | 0.32 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.25 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.99 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.03 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.75 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.88 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.40 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.51 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.56 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.42 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.44 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.44 | MC |
| SRR5856927 | leaf | control | 0.77 | MC |
| SRR5856928 | leaf | control | 0.78 | MC |
| SRR5856930 | leaf | salt | 0.79 | MC |
| SRR5856931 | leaf | salt | 0.42 | MC |
| SRR5856932 | leaf | salt | 0.61 | MC |
| SRR5856933 | leaf | control | 0.84 | MC |
| SRR5856934 | leaf | control | 0.76 | MC |
| SRR5856935 | leaf | control | 0.50 | MC |
| SRR5856936 | leaf | salt | 0.69 | MC |
| SRR5856937 | leaf | salt | 0.80 | MC |
| SRR6168974 | leaf | none (control) | 0.53 | MC |
| SRR6168975 | leaf | none (control) | 1.48 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.73 | MC |
| SRR6168981 | leaf | none (control) | 0.40 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.89 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.71 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.36 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.87 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.76 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.73 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.54 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.68 | MC |
| SRR5110447 | panicle | Dusk | 0.55 | MC |
| SRR5110448 | panicle | Dusk | 0.88 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.69 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.32 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.92 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.26 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.29 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.67 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.76 | MC |
| SRR5126147 | root | "mock,1_day" | 2.45 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.73 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.25 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.38 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.96 | MC |
| SRR5126165 | root | "mock,14_days" | 3.08 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.11 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.20 | MC |
| SRR1213695 | root | wt | 0.30 | MC |
| SRR6441554 | seedling | wild_type | 0.29 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.57 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.35 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 2.25 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.56 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.50 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.60 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.30 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.95 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.57 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 6.83 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.09 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.98 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.73 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.69 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.93 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.37 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.15 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.32 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.10 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.59 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.75 | MC |