| SRR4457249 | 2nd_leaf | DAH4 | 1.14 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.29 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.00 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.12 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.82 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.59 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.67 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 4.37 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.60 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.64 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.82 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.40 | MC |
| SRR5560727 | caryopsis | wild_type | 0.33 | MC |
| SRR5560728 | caryopsis | wild_type | 0.46 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.21 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.96 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.51 | MC |
| SRR7265403 | coleoptile | 2dN | 2.66 | MC |
| SRR7265404 | coleoptile | 2dN | 2.25 | MC |
| SRR7265405 | coleoptile | 2dN | 2.24 | MC |
| SRR7265411 | coleoptile | 3dN | 3.54 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.14 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR7265389 | embryo | 12hA | 0.92 | MC |
| SRR7265390 | embryo | 12hA | 0.57 | MC |
| SRR7265391 | embryo | 12hN | 1.14 | MC |
| SRR7265393 | embryo | 12hN | 0.77 | MC |
| SRR7265397 | embryo | 24hN | 1.02 | MC |
| SRR7265399 | embryo | 24hN | 1.39 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.64 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.91 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.05 | MC |
| SRR4457234 | flag_leaf | DAH12 | 2.13 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.95 | MC |
| SRR4457236 | flag_leaf | DAH12 | 3.12 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.22 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.38 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.02 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.73 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.44 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.48 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.62 | MC |
| SRR8240824 | leaf | wild_type | 0.59 | MC |
| SRR8240826 | leaf | wild_type | 0.89 | MC |
| SRR8240818 | leaf | wild_type | 0.31 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.37 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.53 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.53 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.95 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.73 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.61 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.95 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.73 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.61 | MC |
| SRR1761528 | leaf | drought | 0.95 | MC |
| SRR1761529 | leaf | drought | 0.73 | MC |
| SRR1761530 | leaf | control | 0.61 | MC |
| SRR504365 | leaf | wt | 0.25 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.65 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.74 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.83 | MC |
| SRR6417967 | leaf | H2O_control | 0.70 | MC |
| SRR6417969 | leaf | H2O_control | 3.53 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.61 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.32 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.27 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.50 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.42 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.33 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 4.19 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.85 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.03 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.82 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.86 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.59 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.13 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.63 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.23 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.52 | MC |
| SRR6502088 | leaf | control | 1.37 | MC |
| SRR6502089 | leaf | control | 1.35 | MC |
| SRR6502090 | leaf | control | 1.29 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.40 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.35 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.81 | MC |
| SRR6502100 | leaf | control | 0.79 | MC |
| SRR6502101 | leaf | control | 0.84 | MC |
| SRR6502102 | leaf | control | 1.21 | MC |
| SRR5856927 | leaf | control | 0.50 | MC |
| SRR5856928 | leaf | control | 0.57 | MC |
| SRR5856929 | leaf | control | 0.53 | MC |
| SRR5856930 | leaf | salt | 0.81 | MC |
| SRR5856931 | leaf | salt | 1.05 | MC |
| SRR5856932 | leaf | salt | 0.89 | MC |
| SRR5856933 | leaf | control | 0.43 | MC |
| SRR5856934 | leaf | control | 0.46 | MC |
| SRR5856936 | leaf | salt | 1.28 | MC |
| SRR5856937 | leaf | salt | 1.68 | MC |
| SRR5856938 | leaf | salt | 1.09 | MC |
| SRR8582890 | panicle | AM | 0.42 | MC |
| SRR8582893 | panicle | PM | 0.37 | MC |
| SRR5110429 | panicle | Dawn | 0.94 | MC |
| SRR5110430 | panicle | Dawn | 0.79 | MC |
| SRR5110431 | panicle | Dawn | 0.43 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.66 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.23 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.79 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5126147 | root | "mock,1_day" | 2.05 | MC |
| SRR5126148 | root | "mock,1_day" | 0.82 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.66 | MC |
| SRR5126153 | root | "mock,7_days" | 1.04 | MC |
| SRR5126155 | root | "mock,7_days" | 0.39 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126167 | root | "mock,14_days" | 0.92 | MC |
| SRR5126169 | root | "mock,14_days" | 0.52 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.49 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.16 | MC |
| SRR1213694 | root | wt | 0.37 | MC |
| SRR4947479 | root | control | 0.79 | MC |
| SRR4947481 | root | control | 0.67 | MC |
| SRR4947482 | root | Al | 0.90 | MC |
| SRR4947483 | root | Al | 0.86 | MC |
| SRR4947484 | root | Al | 0.85 | MC |
| SRR4947485 | root | Al | 0.98 | MC |
| SRR4947487 | root | control | 0.78 | MC |
| SRR4947490 | root | Al | 0.52 | MC |
| SRR4947491 | root | Al | 0.64 | MC |
| SRR4947492 | root | Al | 1.52 | MC |
| SRR4947493 | root | Al | 1.16 | MC |
| SRR4947500 | root | Al | 0.59 | MC |
| SRR4947503 | root | control | 1.09 | MC |
| SRR4947504 | root | control | 0.53 | MC |
| SRR4947505 | root | control | 0.87 | MC |
| SRR4947507 | root | Al | 0.75 | MC |
| SRR4947508 | root | Al | 1.33 | MC |
| SRR4947509 | root | Al | 0.82 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.06 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.95 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.56 | MC |
| SRR6502094 | root | control | 3.45 | MC |
| SRR6502095 | root | control | 3.20 | MC |
| SRR6502096 | root | control | 2.56 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.88 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.36 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.31 | MC |
| SRR6502106 | root | control | 0.44 | MC |
| SRR6502107 | root | control | 3.16 | MC |
| SRR6502108 | root | control | 1.32 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.42 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.41 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.62 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.53 | MC |
| SRR6441555 | seedling | wild_type | 0.26 | MC |
| SRR2154086 | seedling | wt | 0.54 | MC |
| SRR2154082 | seedling | wt | 0.71 | MC |
| SRR2154084 | seedling | wt | 0.61 | MC |
| SRR2154085 | seedling | wt | 3.89 | MC |
| SRR2154087 | seedling | wt | 0.50 | MC |
| SRR3098741 | seedling | wt | 0.52 | MC |
| SRR3098742 | seedling | wt | 0.46 | MC |
| SRR3098743 | seedling | wt | 0.19 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.42 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.37 | MC |
| SRR1944583 | seedling | no_treatment | 0.69 | MC |
| SRR358793 | seedling | wt | 0.50 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.39 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.49 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.52 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.61 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.60 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.75 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.77 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.84 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.04 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.39 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.09 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.35 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.80 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.42 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.17 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.49 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.41 | MC |