| SRR4457249 | 2nd_leaf | DAH4 | 2.33 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 3.12 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.92 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.90 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.29 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.02 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.46 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.16 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.26 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.99 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.54 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.75 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.77 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.91 | MC |
| SRR3745125 | anther | wt | 1.67 | MC |
| SRR3745126 | anther | wt | 1.21 | MC |
| SRR3745127 | anther | wt | 1.11 | MC |
| SRR5560729 | caryopsis | wild_type | 4.72 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.58 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.46 | MC |
| SRR4947495 | root | control | 2.41 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.93 | MC |
| SRR7265402 | coleoptile | 2dA | 3.56 | MC |
| SRR7265403 | coleoptile | 2dN | 1.71 | MC |
| SRR7265404 | coleoptile | 2dN | 3.06 | MC |
| SRR7265406 | coleoptile | 3dA | 1.19 | MC |
| SRR7265407 | coleoptile | 3dA | 1.65 | MC |
| SRR7265408 | coleoptile | 3dA | 1.07 | MC |
| SRR7265409 | coleoptile | 3dN | 2.53 | MC |
| SRR7265410 | coleoptile | 3dN | 1.92 | MC |
| SRR7265411 | coleoptile | 3dN | 2.01 | MC |
| SRR7265412 | coleoptile | 4dA | 1.65 | MC |
| SRR7265413 | coleoptile | 4dA | 3.23 | MC |
| SRR7265414 | coleoptile | 4dA | 2.82 | MC |
| SRR7265415 | coleoptile | 4dN | 4.11 | MC |
| SRR7265416 | coleoptile | 4dN | 1.73 | MC |
| SRR7265417 | coleoptile | 4dN | 2.86 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.00 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.60 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.08 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.98 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.02 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.74 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.56 | MC |
| SRR7265388 | embryo | 12hA | 4.17 | MC |
| SRR7265397 | embryo | 24hN | 5.08 | MC |
| SRR7265399 | embryo | 24hN | 4.15 | MC |
| SRR2338867 | endosprem | control | 0.80 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.61 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.37 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.01 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.74 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.96 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.84 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.58 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.44 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.71 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.69 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.94 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.06 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.65 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.11 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.58 | MC |
| SRR8060837 | leaf | wild_type | 0.70 | MC |
| SRR8240824 | leaf | wild_type | 1.71 | MC |
| SRR8240826 | leaf | wild_type | 2.15 | MC |
| SRR8240818 | leaf | wild_type | 0.27 | MC |
| SRR8240820 | leaf | wild_type | 0.31 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.66 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.26 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.96 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.47 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.61 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.10 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.85 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.97 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.79 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.57 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.56 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.74 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.55 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.01 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.29 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.67 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.87 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.25 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.00 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.29 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.06 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.98 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.18 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.82 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.18 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 2.53 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.51 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.51 | MC |
| SRR1761531 | leaf | control | 1.51 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.32 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.71 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.57 | MC |
| SRR6417968 | leaf | H2O_control | 1.40 | MC |
| SRR6417969 | leaf | H2O_control | 1.99 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.69 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.01 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 4.29 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.61 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.35 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.02 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.44 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.43 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.11 | MC |
| SRR1213692 | leaf | wt | 4.28 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.65 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.85 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.89 | MC |
| SRR6502089 | leaf | control | 1.29 | MC |
| SRR6502090 | leaf | control | 3.08 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 4.68 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.96 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.62 | MC |
| SRR6502101 | leaf | control | 1.04 | MC |
| SRR6502102 | leaf | control | 1.55 | MC |
| SRR5856927 | leaf | control | 1.49 | MC |
| SRR5856929 | leaf | control | 0.22 | MC |
| SRR5856931 | leaf | salt | 1.25 | MC |
| SRR5856933 | leaf | control | 0.59 | MC |
| SRR5856936 | leaf | salt | 1.49 | MC |
| SRR5856937 | leaf | salt | 0.78 | MC |
| SRR5856938 | leaf | salt | 1.41 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.13 | MC |
| SRR6168973 | leaf | none (control) | 0.82 | MC |
| SRR6168974 | leaf | none (control) | 1.12 | MC |
| SRR6168975 | leaf | none (control) | 2.63 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.42 | MC |
| SRR6168981 | leaf | none (control) | 1.61 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.09 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.46 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.92 | MC |
| SRR8582888 | panicle | AM | 0.36 | MC |
| SRR8582889 | panicle | AM | 0.41 | MC |
| SRR8582891 | panicle | PM | 2.24 | MC |
| SRR8582892 | panicle | PM | 1.45 | MC |
| SRR8582893 | panicle | PM | 0.95 | MC |
| SRR5110429 | panicle | Dawn | 4.05 | MC |
| SRR5110430 | panicle | Dawn | 5.24 | MC |
| SRR5110432 | panicle | Dawn | 3.90 | MC |
| SRR4947496 | root | control | 0.93 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.19 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.85 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 2.97 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 4.24 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.56 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.11 | MC |
| SRR5110446 | panicle | Dusk | 3.91 | MC |
| SRR5110448 | panicle | Dusk | 4.80 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.88 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.84 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.05 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.25 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.86 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.08 | MC |
| SRR1633182 | panicle | WT | 1.37 | MC |
| SRR1633185 | panicle | WT | 2.65 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.73 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.30 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.93 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.99 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.47 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.09 | MC |
| SRR5126149 | root | "mock,1_day" | 1.23 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.84 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.59 | MC |
| SRR5126153 | root | "mock,7_days" | 1.49 | MC |
| SRR5126155 | root | "mock,7_days" | 0.78 | MC |
| SRR5126157 | root | "mock,7_days" | 1.39 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.52 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.58 | MC |
| SRR5126165 | root | "mock,14_days" | 1.87 | MC |
| SRR5126167 | root | "mock,14_days" | 1.03 | MC |
| SRR5126169 | root | "mock,14_days" | 1.12 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.74 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.90 | MC |
| SRR1213694 | root | wt | 0.75 | MC |
| SRR4947479 | root | control | 1.19 | MC |
| SRR4947481 | root | control | 1.92 | MC |
| SRR4947482 | root | Al | 2.55 | MC |
| SRR4947485 | root | Al | 1.57 | MC |
| SRR4947487 | root | control | 2.68 | MC |
| SRR4947488 | root | control | 0.49 | MC |
| SRR4947489 | root | control | 1.56 | MC |
| SRR4947490 | root | Al | 1.58 | MC |
| SRR4947492 | root | Al | 1.60 | MC |
| SRR4947493 | root | Al | 2.14 | MC |
| SRR4947497 | root | control | 3.42 | MC |
| SRR4947498 | root | Al | 5.37 | MC |
| SRR4947499 | root | Al | 2.87 | MC |
| SRR4947501 | root | Al | 3.44 | MC |
| SRR4947502 | root | control | 4.47 | MC |
| SRR4947503 | root | control | 2.34 | MC |
| SRR4947504 | root | control | 1.77 | MC |
| SRR4947505 | root | control | 2.49 | MC |
| SRR4947506 | root | Al | 2.14 | MC |
| SRR4947507 | root | Al | 5.37 | MC |
| SRR4947509 | root | Al | 2.75 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.61 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.83 | MC |
| SRR6502096 | root | control | 1.39 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.93 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.36 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.34 | MC |
| SRR6502108 | root | control | 1.54 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.61 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.12 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.39 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.57 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.61 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.07 | MC |
| SRR6441555 | seedling | wild_type | 0.31 | MC |
| SRR2154086 | seedling | wt | 3.53 | MC |
| SRR2154082 | seedling | wt | 2.19 | MC |
| SRR2154083 | seedling | wt | 2.64 | MC |
| SRR2154085 | seedling | wt | 2.90 | MC |
| SRR3098741 | seedling | wt | 1.82 | MC |
| SRR3098742 | seedling | wt | 1.00 | MC |
| SRR3098743 | seedling | wt | 1.04 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.92 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.55 | MC |
| SRR358791 | seedling | wt | 6.67 | MC |
| SRR358792 | seedling | wt | 6.48 | MC |
| SRR358793 | seedling | wt | 6.29 | MC |
| SRR358794 | seedling | wt | 4.99 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.18 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.77 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.88 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.08 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.39 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.79 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.47 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.79 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.84 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.17 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.38 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.33 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.11 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.18 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.12 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.45 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.25 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.94 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.42 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.05 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.22 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.44 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.45 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.13 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.70 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.01 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.32 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.63 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.63 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.63 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.14 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.74 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.19 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.52 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.05 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.57 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.62 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.85 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.42 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.12 | MC |