| SRR358796 | callus | wt | 1.23 | MC |
| SRR358797 | callus | wt | 1.13 | MC |
| SRR358798 | callus | wt | 1.26 | MC |
| SRR5560727 | caryopsis | wild_type | 0.48 | MC |
| SRR5560728 | caryopsis | wild_type | 0.30 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.24 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.77 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR7265400 | coleoptile | 2dA | 1.11 | MC |
| SRR7265401 | coleoptile | 2dA | 0.96 | MC |
| SRR7265402 | coleoptile | 2dA | 1.09 | MC |
| SRR7265403 | coleoptile | 2dN | 0.63 | MC |
| SRR7265404 | coleoptile | 2dN | 0.68 | MC |
| SRR7265405 | coleoptile | 2dN | 0.85 | MC |
| SRR7265406 | coleoptile | 3dA | 0.82 | MC |
| SRR7265407 | coleoptile | 3dA | 0.62 | MC |
| SRR7265408 | coleoptile | 3dA | 0.53 | MC |
| SRR7265409 | coleoptile | 3dN | 0.99 | MC |
| SRR7265410 | coleoptile | 3dN | 0.94 | MC |
| SRR7265411 | coleoptile | 3dN | 0.98 | MC |
| SRR7265412 | coleoptile | 4dA | 0.46 | MC |
| SRR7265413 | coleoptile | 4dA | 0.84 | MC |
| SRR7265414 | coleoptile | 4dA | 1.09 | MC |
| SRR7265415 | coleoptile | 4dN | 1.52 | MC |
| SRR7265416 | coleoptile | 4dN | 1.27 | MC |
| SRR7265417 | coleoptile | 4dN | 1.53 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.13 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.78 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.85 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.93 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.94 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.66 | MC |
| SRR7265382 | embryo | 3hA | 1.07 | MC |
| SRR7265383 | embryo | 3hA | 0.49 | MC |
| SRR7265384 | embryo | 3hA | 1.20 | MC |
| SRR7265385 | embryo | 3hN | 0.67 | MC |
| SRR7265386 | embryo | 3hN | 0.32 | MC |
| SRR7265387 | embryo | 3hN | 0.65 | MC |
| SRR7265388 | embryo | 12hA | 1.64 | MC |
| SRR7265389 | embryo | 12hA | 1.50 | MC |
| SRR7265390 | embryo | 12hA | 1.35 | MC |
| SRR7265391 | embryo | 12hN | 1.18 | MC |
| SRR7265392 | embryo | 12hN | 1.04 | MC |
| SRR7265393 | embryo | 12hN | 1.08 | MC |
| SRR7265394 | embryo | 24hA | 0.94 | MC |
| SRR7265395 | embryo | 24hA | 1.41 | MC |
| SRR7265396 | embryo | 24hA | 1.03 | MC |
| SRR7265397 | embryo | 24hN | 0.61 | MC |
| SRR7265398 | embryo | 24hN | 1.31 | MC |
| SRR7265399 | embryo | 24hN | 1.43 | MC |
| SRR2338868 | endosprem | high_temperature | 0.63 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.38 | MC |
| SRR1213691 | flower | wt | 0.62 | MC |
| SRR8240824 | leaf | wild_type | 0.31 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.85 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.66 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.30 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.45 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.21 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.28 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR6502088 | leaf | control | 0.54 | MC |
| SRR6502089 | leaf | control | 0.38 | MC |
| SRR6168973 | leaf | none (control) | 1.02 | MC |
| SRR6168974 | leaf | none (control) | 1.04 | MC |
| SRR6168975 | leaf | none (control) | 0.58 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.56 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.25 | MC |
| SRR8582889 | panicle | AM | 0.12 | MC |
| SRR8582892 | panicle | PM | 0.89 | MC |
| SRR8582893 | panicle | PM | 0.84 | MC |
| SRR1633182 | panicle | WT | 0.46 | MC |
| SRR1633185 | panicle | WT | 0.53 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.34 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.26 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5126155 | root | "mock,7_days" | 0.31 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.52 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.67 | MC |
| SRR5126167 | root | "mock,14_days" | 0.33 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.65 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.81 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.68 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.41 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.30 | MC |
| SRR6502106 | root | control | 0.38 | MC |
| SRR6441554 | seedling | wild_type | 0.43 | MC |
| SRR6441555 | seedling | wild_type | 0.30 | MC |
| SRR2154085 | seedling | wt | 0.77 | MC |
| SRR3098741 | seedling | wt | 0.25 | MC |
| SRR3098742 | seedling | wt | 0.28 | MC |
| SRR3098743 | seedling | wt | 0.16 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.40 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.41 | MC |
| SRR1944583 | seedling | no_treatment | 0.41 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.77 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.36 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.77 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.76 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.94 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.57 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.28 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.18 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.43 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.34 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.06 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.12 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.96 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.46 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.41 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.31 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.66 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.60 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.13 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.87 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.61 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.08 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.62 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.62 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.67 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.01 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.91 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.55 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.73 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.77 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.73 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.23 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.38 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.51 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.50 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.57 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.50 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.49 | MC |