| SRR4457251 | 2nd_leaf | DAH4 | 2.31 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.59 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.53 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.69 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.35 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.44 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.85 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.58 | MC |
| SRR5560727 | caryopsis | wild_type | 0.70 | MC |
| SRR5560728 | caryopsis | wild_type | 0.54 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.47 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.58 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.71 | MC |
| SRR7265400 | coleoptile | 2dA | 0.76 | MC |
| SRR7265401 | coleoptile | 2dA | 1.54 | MC |
| SRR7265402 | coleoptile | 2dA | 1.13 | MC |
| SRR7265403 | coleoptile | 2dN | 0.49 | MC |
| SRR7265406 | coleoptile | 3dA | 0.58 | MC |
| SRR7265407 | coleoptile | 3dA | 0.49 | MC |
| SRR7265408 | coleoptile | 3dA | 0.88 | MC |
| SRR7265413 | coleoptile | 4dA | 0.52 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.82 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.08 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.75 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.92 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.47 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.97 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.52 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.19 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.91 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.32 | MC |
| SRR7265376 | embryo | 1hA | 2.49 | MC |
| SRR7265377 | embryo | 1hA | 2.04 | MC |
| SRR7265378 | embryo | 1hA | 2.47 | MC |
| SRR7265379 | embryo | 1hN | 2.51 | MC |
| SRR7265380 | embryo | 1hN | 2.27 | MC |
| SRR7265381 | embryo | 1hN | 2.01 | MC |
| SRR7265382 | embryo | 3hA | 1.32 | MC |
| SRR7265383 | embryo | 3hA | 1.41 | MC |
| SRR7265384 | embryo | 3hA | 1.32 | MC |
| SRR7265385 | embryo | 3hN | 2.31 | MC |
| SRR7265386 | embryo | 3hN | 1.49 | MC |
| SRR7265387 | embryo | 3hN | 2.39 | MC |
| SRR7265388 | embryo | 12hA | 1.20 | MC |
| SRR7265389 | embryo | 12hA | 1.34 | MC |
| SRR7265390 | embryo | 12hA | 0.84 | MC |
| SRR7265392 | embryo | 12hN | 0.73 | MC |
| SRR7265393 | embryo | 12hN | 0.65 | MC |
| SRR7265395 | embryo | 24hA | 0.57 | MC |
| SRR7265397 | embryo | 24hN | 0.62 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.47 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.62 | MC |
| SRR1213691 | flower | wt | 0.74 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.57 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.15 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.48 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.35 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.78 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.80 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.68 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.08 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.02 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.93 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.36 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.80 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.17 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.68 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.02 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.78 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.02 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.15 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.14 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.48 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.34 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.28 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.60 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.44 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.87 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.10 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.45 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.40 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.56 | MC |
| SRR5856933 | leaf | control | 0.50 | MC |
| SRR5856935 | leaf | control | 0.33 | MC |
| SRR5856936 | leaf | salt | 0.35 | MC |
| SRR5856937 | leaf | salt | 0.20 | MC |
| SRR5856938 | leaf | salt | 0.21 | MC |
| SRR6168973 | leaf | none (control) | 0.43 | MC |
| SRR6168974 | leaf | none (control) | 0.31 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168979 | leaf | none (control) | 0.20 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.25 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.43 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.21 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.87 | MC |
| SRR1633182 | panicle | WT | 1.58 | MC |
| SRR1633185 | panicle | WT | 4.85 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.33 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.65 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.76 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.96 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.22 | MC |
| SRR5126147 | root | "mock,1_day" | 1.98 | MC |
| SRR5126148 | root | "mock,1_day" | 1.82 | MC |
| SRR5126149 | root | "mock,1_day" | 2.36 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.06 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.59 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.05 | MC |
| SRR5126153 | root | "mock,7_days" | 2.97 | MC |
| SRR1213694 | root | wt | 2.00 | MC |
| SRR4947480 | root | control | 4.03 | MC |
| SRR4947484 | root | Al | 3.63 | MC |
| SRR4947485 | root | Al | 4.23 | MC |
| SRR4947488 | root | control | 3.97 | MC |
| SRR4947489 | root | control | 4.11 | MC |
| SRR4947492 | root | Al | 3.79 | MC |
| SRR4947493 | root | Al | 4.55 | MC |
| SRR4947497 | root | control | 5.12 | MC |
| SRR4947500 | root | Al | 2.71 | MC |
| SRR4947501 | root | Al | 2.65 | MC |
| SRR4947504 | root | control | 4.71 | MC |
| SRR4947505 | root | control | 3.69 | MC |
| SRR4947508 | root | Al | 2.95 | MC |
| SRR4947509 | root | Al | 3.98 | MC |
| SRR6502094 | root | control | 4.17 | MC |
| SRR6502095 | root | control | 3.30 | MC |
| SRR6502096 | root | control | 4.00 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.05 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.59 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.76 | MC |
| SRR6502106 | root | control | 2.32 | MC |
| SRR6502107 | root | control | 3.22 | MC |
| SRR6502108 | root | control | 2.01 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.79 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.91 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.98 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.45 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.60 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.20 | MC |
| SRR6441554 | seedling | wild_type | 0.27 | MC |
| SRR2154086 | seedling | wt | 0.69 | MC |
| SRR2154084 | seedling | wt | 0.68 | MC |
| SRR2154087 | seedling | wt | 0.39 | MC |
| SRR3098743 | seedling | wt | 0.20 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.51 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.54 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.74 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.71 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.61 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.32 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.78 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.11 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.81 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.80 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.52 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.87 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 4.18 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.51 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.19 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.43 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.23 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 3.20 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.75 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.03 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.25 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.86 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.66 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.28 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.72 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.83 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.72 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.63 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.21 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.15 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.13 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.34 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.06 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.54 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.59 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.21 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.41 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.82 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.95 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.30 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.65 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.79 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.28 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.44 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.93 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.59 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.16 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.97 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |