| SRR4457250 | 2nd_leaf | DAH4 | 4.35 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.04 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.14 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.94 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.80 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.84 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.44 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.11 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.09 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.42 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.81 | MC |
| SRR5560727 | caryopsis | wild_type | 0.95 | MC |
| SRR5560728 | caryopsis | wild_type | 1.91 | MC |
| SRR5560729 | caryopsis | wild_type | 1.69 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.98 | MC |
| SRR4947495 | root | control | 4.68 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.14 | MC |
| SRR7265415 | coleoptile | 4dN | 4.45 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.82 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.14 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.82 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.19 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.65 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.84 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.39 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.23 | MC |
| SRR7265379 | embryo | 1hN | 2.44 | MC |
| SRR7265391 | embryo | 12hN | 3.18 | MC |
| SRR7265399 | embryo | 24hN | 2.37 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.86 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.85 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.50 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.91 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.94 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.69 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.10 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.40 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.38 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.04 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.54 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.38 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.57 | MC |
| SRR1213691 | flower | wt | 3.51 | MC |
| SRR8060835 | leaf | wild_type | 1.00 | MC |
| SRR8240824 | leaf | wild_type | 0.90 | MC |
| SRR8240825 | leaf | wild_type | 0.29 | MC |
| SRR8240826 | leaf | wild_type | 0.37 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.88 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.30 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.61 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.54 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.26 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.43 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.54 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.64 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.64 | MC |
| SRR1761529 | leaf | drought | 0.64 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.56 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.74 | MC |
| SRR6417967 | leaf | H2O_control | 0.67 | MC |
| SRR6417968 | leaf | H2O_control | 0.79 | MC |
| SRR6417969 | leaf | H2O_control | 1.84 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.18 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.00 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.32 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.20 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.94 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.46 | MC |
| SRR6502088 | leaf | control | 1.60 | MC |
| SRR6502090 | leaf | control | 0.43 | MC |
| SRR5856927 | leaf | control | 1.99 | MC |
| SRR5856928 | leaf | control | 1.24 | MC |
| SRR5856929 | leaf | control | 1.52 | MC |
| SRR5856930 | leaf | salt | 1.29 | MC |
| SRR5856931 | leaf | salt | 1.54 | MC |
| SRR5856934 | leaf | control | 2.07 | MC |
| SRR5856936 | leaf | salt | 1.64 | MC |
| SRR6168974 | leaf | none (control) | 1.15 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.23 | MC |
| SRR6168979 | leaf | none (control) | 0.30 | MC |
| SRR6168981 | leaf | none (control) | 0.49 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.64 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.40 | MC |
| SRR8582889 | panicle | AM | 1.12 | MC |
| SRR5110432 | panicle | Dawn | 3.72 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.11 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.31 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.63 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.25 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.78 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.67 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.23 | MC |
| SRR5110445 | panicle | Dusk | 2.80 | MC |
| SRR5110447 | panicle | Dusk | 2.38 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.83 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.08 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.05 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.59 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.04 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 4.69 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.33 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.03 | MC |
| SRR5126148 | root | "mock,1_day" | 0.52 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.71 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.33 | MC |
| SRR5126153 | root | "mock,7_days" | 2.67 | MC |
| SRR5126155 | root | "mock,7_days" | 3.71 | MC |
| SRR5126157 | root | "mock,7_days" | 2.51 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.42 | MC |
| SRR5126165 | root | "mock,14_days" | 3.56 | MC |
| SRR5126169 | root | "mock,14_days" | 3.91 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.77 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.77 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 2.32 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.03 | MC |
| SRR4947482 | root | Al | 2.17 | MC |
| SRR4947484 | root | Al | 2.33 | MC |
| SRR4947489 | root | control | 2.67 | MC |
| SRR4947491 | root | Al | 2.71 | MC |
| SRR4947494 | root | control | 1.69 | MC |
| SRR4947498 | root | Al | 1.65 | MC |
| SRR4947502 | root | control | 3.11 | MC |
| SRR4947503 | root | control | 0.55 | MC |
| SRR4947505 | root | control | 1.76 | MC |
| SRR4947507 | root | Al | 3.35 | MC |
| SRR4947509 | root | Al | 0.53 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.36 | MC |
| SRR6502094 | root | control | 3.48 | MC |
| SRR6502095 | root | control | 1.91 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.99 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.58 | MC |
| SRR6502106 | root | control | 1.68 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.41 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.50 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.10 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.26 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR2154086 | seedling | wt | 2.17 | MC |
| SRR3098741 | seedling | wt | 0.57 | MC |
| SRR3098742 | seedling | wt | 0.43 | MC |
| SRR3098743 | seedling | wt | 0.67 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.59 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 11.63 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.96 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.55 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.64 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.29 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.69 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.99 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.25 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.88 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.43 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.40 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.11 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.00 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.36 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.51 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.97 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.44 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.43 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.08 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.80 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.87 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 3.17 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.03 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.53 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |