| SRR4457249 | 2nd_leaf | DAH4 | 0.62 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.29 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.81 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.58 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.39 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.48 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.51 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.46 | MC |
| SRR3745125 | anther | wt | 4.35 | MC |
| SRR3745126 | anther | wt | 2.87 | MC |
| SRR3745127 | anther | wt | 2.99 | MC |
| SRR5560727 | caryopsis | wild_type | 1.20 | MC |
| SRR5560728 | caryopsis | wild_type | 1.32 | MC |
| SRR5560729 | caryopsis | wild_type | 1.47 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.53 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.62 | MC |
| SRR7265400 | coleoptile | 2dA | 1.08 | MC |
| SRR7265401 | coleoptile | 2dA | 0.87 | MC |
| SRR7265402 | coleoptile | 2dA | 0.72 | MC |
| SRR7265403 | coleoptile | 2dN | 0.68 | MC |
| SRR7265404 | coleoptile | 2dN | 0.67 | MC |
| SRR7265405 | coleoptile | 2dN | 0.87 | MC |
| SRR7265407 | coleoptile | 3dA | 0.90 | MC |
| SRR7265408 | coleoptile | 3dA | 0.70 | MC |
| SRR7265409 | coleoptile | 3dN | 1.68 | MC |
| SRR7265410 | coleoptile | 3dN | 1.19 | MC |
| SRR7265411 | coleoptile | 3dN | 1.60 | MC |
| SRR7265412 | coleoptile | 4dA | 0.66 | MC |
| SRR7265413 | coleoptile | 4dA | 0.81 | MC |
| SRR7265414 | coleoptile | 4dA | 0.97 | MC |
| SRR7265415 | coleoptile | 4dN | 1.57 | MC |
| SRR7265416 | coleoptile | 4dN | 1.61 | MC |
| SRR7265417 | coleoptile | 4dN | 1.77 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.80 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.92 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.91 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.00 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.37 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.86 | MC |
| SRR7265377 | embryo | 1hA | 0.76 | MC |
| SRR7265378 | embryo | 1hA | 0.57 | MC |
| SRR7265379 | embryo | 1hN | 0.98 | MC |
| SRR7265381 | embryo | 1hN | 0.65 | MC |
| SRR7265382 | embryo | 3hA | 0.67 | MC |
| SRR7265383 | embryo | 3hA | 0.75 | MC |
| SRR7265384 | embryo | 3hA | 0.74 | MC |
| SRR7265385 | embryo | 3hN | 0.76 | MC |
| SRR7265386 | embryo | 3hN | 0.42 | MC |
| SRR7265388 | embryo | 12hA | 1.39 | MC |
| SRR7265390 | embryo | 12hA | 0.44 | MC |
| SRR7265391 | embryo | 12hN | 0.71 | MC |
| SRR7265392 | embryo | 12hN | 0.61 | MC |
| SRR7265393 | embryo | 12hN | 0.64 | MC |
| SRR7265394 | embryo | 24hA | 0.98 | MC |
| SRR7265395 | embryo | 24hA | 0.82 | MC |
| SRR7265396 | embryo | 24hA | 0.63 | MC |
| SRR7265398 | embryo | 24hN | 0.91 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.36 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.97 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.18 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.89 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.36 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.28 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.31 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.44 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.45 | MC |
| SRR1213691 | flower | wt | 1.69 | MC |
| SRR8060835 | leaf | wild_type | 0.20 | MC |
| SRR8240824 | leaf | wild_type | 0.92 | MC |
| SRR8240825 | leaf | wild_type | 0.82 | MC |
| SRR8240826 | leaf | wild_type | 0.88 | MC |
| SRR8240818 | leaf | wild_type | 0.74 | MC |
| SRR8240819 | leaf | wild_type | 0.54 | MC |
| SRR8240820 | leaf | wild_type | 1.00 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.52 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.39 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.45 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.49 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.26 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.37 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.58 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 5.42 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.58 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.82 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.50 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.49 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.27 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.54 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.27 | MC |
| SRR1761530 | leaf | control | 2.49 | MC |
| SRR1761531 | leaf | control | 1.24 | MC |
| SRR504365 | leaf | wt | 2.10 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.37 | MC |
| SRR6417969 | leaf | H2O_control | 3.53 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 3.17 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.89 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.47 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.63 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.60 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 4.04 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.51 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.41 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.05 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.92 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.42 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.57 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.68 | MC |
| SRR1213692 | leaf | wt | 1.32 | MC |
| SRR1213693 | leaf | wt | 1.50 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.78 | MC |
| SRR6502089 | leaf | control | 0.87 | MC |
| SRR6502090 | leaf | control | 0.60 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.43 | MC |
| SRR6502100 | leaf | control | 0.34 | MC |
| SRR6502101 | leaf | control | 0.35 | MC |
| SRR6502102 | leaf | control | 0.43 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.45 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.51 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.92 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR8582888 | panicle | AM | 1.31 | MC |
| SRR8582890 | panicle | AM | 1.28 | MC |
| SRR8582891 | panicle | PM | 3.57 | MC |
| SRR8582892 | panicle | PM | 2.13 | MC |
| SRR8582893 | panicle | PM | 2.53 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.71 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.32 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.18 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.08 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.32 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.14 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.48 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.03 | MC |
| SRR5126147 | root | "mock,1_day" | 0.39 | MC |
| SRR5126149 | root | "mock,1_day" | 0.67 | MC |
| SRR5126153 | root | "mock,7_days" | 2.41 | MC |
| SRR5126155 | root | "mock,7_days" | 3.44 | MC |
| SRR5126157 | root | "mock,7_days" | 5.16 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.99 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.46 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.32 | MC |
| SRR5126165 | root | "mock,14_days" | 1.34 | MC |
| SRR5126167 | root | "mock,14_days" | 3.36 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.10 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.06 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.21 | MC |
| SRR1213694 | root | wt | 2.52 | MC |
| SRR1213695 | root | wt | 1.21 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.61 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.31 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.40 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.72 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.63 | MC |
| SRR6441554 | seedling | wild_type | 1.81 | MC |
| SRR6441555 | seedling | wild_type | 2.11 | MC |
| SRR2154086 | seedling | wt | 1.66 | MC |
| SRR2154085 | seedling | wt | 2.43 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.71 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.40 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.48 | MC |
| SRR1944583 | seedling | no_treatment | 3.51 | MC |
| SRR358792 | seedling | wt | 1.41 | MC |
| SRR358793 | seedling | wt | 2.27 | MC |
| SRR358794 | seedling | wt | 1.69 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.80 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.55 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.78 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.38 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.29 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.75 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.99 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.67 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.78 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.99 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.31 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.89 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.10 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.19 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.49 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.78 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.70 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.39 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.42 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.65 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.06 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.79 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.34 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.75 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.36 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.52 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.31 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.27 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.99 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.41 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.04 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.98 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.87 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.18 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.82 | MC |