| SRR4457249 | 2nd_leaf | DAH4 | 0.91 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.56 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.26 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.59 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.25 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.81 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.73 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.71 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.94 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.76 | MC |
| SRR358795 | callus | wt | 1.34 | MC |
| SRR358796 | callus | wt | 1.70 | MC |
| SRR358797 | callus | wt | 1.02 | MC |
| SRR358798 | callus | wt | 1.66 | MC |
| SRR5560727 | caryopsis | wild_type | 0.33 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.71 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.15 | MC |
| SRR7265400 | coleoptile | 2dA | 0.72 | MC |
| SRR7265401 | coleoptile | 2dA | 2.02 | MC |
| SRR7265402 | coleoptile | 2dA | 1.20 | MC |
| SRR7265403 | coleoptile | 2dN | 0.86 | MC |
| SRR7265404 | coleoptile | 2dN | 0.62 | MC |
| SRR7265405 | coleoptile | 2dN | 0.49 | MC |
| SRR7265409 | coleoptile | 3dN | 1.18 | MC |
| SRR7265410 | coleoptile | 3dN | 0.82 | MC |
| SRR7265411 | coleoptile | 3dN | 1.04 | MC |
| SRR7265412 | coleoptile | 4dA | 2.66 | MC |
| SRR7265413 | coleoptile | 4dA | 2.44 | MC |
| SRR7265414 | coleoptile | 4dA | 4.08 | MC |
| SRR7265415 | coleoptile | 4dN | 0.84 | MC |
| SRR7265416 | coleoptile | 4dN | 0.80 | MC |
| SRR7265417 | coleoptile | 4dN | 0.71 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.52 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.06 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.13 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.74 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.29 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.76 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.61 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.02 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.13 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265376 | embryo | 1hA | 0.70 | MC |
| SRR7265378 | embryo | 1hA | 0.26 | MC |
| SRR7265381 | embryo | 1hN | 0.31 | MC |
| SRR7265383 | embryo | 3hA | 0.65 | MC |
| SRR7265384 | embryo | 3hA | 0.58 | MC |
| SRR7265385 | embryo | 3hN | 0.48 | MC |
| SRR7265386 | embryo | 3hN | 0.81 | MC |
| SRR7265387 | embryo | 3hN | 0.64 | MC |
| SRR7265388 | embryo | 12hA | 0.49 | MC |
| SRR7265389 | embryo | 12hA | 0.60 | MC |
| SRR7265390 | embryo | 12hA | 0.66 | MC |
| SRR7265394 | embryo | 24hA | 0.55 | MC |
| SRR7265395 | embryo | 24hA | 0.67 | MC |
| SRR7265396 | embryo | 24hA | 0.49 | MC |
| SRR7265397 | embryo | 24hN | 0.56 | MC |
| SRR7265398 | embryo | 24hN | 0.53 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.29 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.73 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.28 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.89 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.79 | MC |
| SRR8060835 | leaf | wild_type | 0.37 | MC |
| SRR8060837 | leaf | wild_type | 0.53 | MC |
| SRR8240818 | leaf | wild_type | 0.50 | MC |
| SRR8240820 | leaf | wild_type | 0.30 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.55 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.58 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.26 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.74 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.34 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.81 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.36 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.17 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.88 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.78 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.94 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.31 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.85 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.91 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.30 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.96 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.80 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.89 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.86 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.42 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.57 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.45 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.79 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.49 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.61 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.45 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.79 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.49 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.61 | MC |
| SRR1761528 | leaf | drought | 2.45 | MC |
| SRR1761529 | leaf | drought | 0.79 | MC |
| SRR1761530 | leaf | control | 0.49 | MC |
| SRR1761531 | leaf | control | 0.61 | MC |
| SRR504365 | leaf | wt | 1.46 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.86 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.74 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.20 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.92 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.00 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.40 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.53 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.27 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 4.20 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.88 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.44 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.56 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.84 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.54 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.84 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.15 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.23 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.33 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.43 | MC |
| SRR6502089 | leaf | control | 1.96 | MC |
| SRR6502090 | leaf | control | 2.24 | MC |
| SRR5856927 | leaf | control | 2.30 | MC |
| SRR5856928 | leaf | control | 1.76 | MC |
| SRR5856933 | leaf | control | 1.55 | MC |
| SRR5856934 | leaf | control | 1.27 | MC |
| SRR5856935 | leaf | control | 0.69 | MC |
| SRR5856937 | leaf | salt | 0.64 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.28 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.07 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.24 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.76 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.50 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.05 | MC |
| SRR4947496 | root | control | 0.48 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.10 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.75 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.48 | MC |
| SRR5110445 | panicle | Dusk | 0.53 | MC |
| SRR5110446 | panicle | Dusk | 0.39 | MC |
| SRR5110448 | panicle | Dusk | 0.83 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.69 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.62 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.14 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.48 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.55 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.15 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.70 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.57 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.96 | MC |
| SRR5126157 | root | "mock,7_days" | 0.84 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.88 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.04 | MC |
| SRR5126165 | root | "mock,14_days" | 2.57 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.28 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.91 | MC |
| SRR4947479 | root | control | 0.47 | MC |
| SRR4947481 | root | control | 1.75 | MC |
| SRR4947484 | root | Al | 0.84 | MC |
| SRR4947487 | root | control | 0.48 | MC |
| SRR4947489 | root | control | 1.26 | MC |
| SRR4947491 | root | Al | 1.09 | MC |
| SRR4947497 | root | control | 0.58 | MC |
| SRR4947500 | root | Al | 0.60 | MC |
| SRR4947501 | root | Al | 0.54 | MC |
| SRR4947504 | root | control | 0.81 | MC |
| SRR4947507 | root | Al | 1.13 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.77 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.13 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.00 | MC |
| SRR6502094 | root | control | 4.28 | MC |
| SRR6502095 | root | control | 1.08 | MC |
| SRR6502096 | root | control | 1.77 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.07 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.03 | MC |
| SRR6502108 | root | control | 0.73 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.31 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.71 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.43 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.06 | MC |
| SRR6441554 | seedling | wild_type | 1.28 | MC |
| SRR6441555 | seedling | wild_type | 1.29 | MC |
| SRR2154082 | seedling | wt | 0.70 | MC |
| SRR2154083 | seedling | wt | 1.58 | MC |
| SRR2154084 | seedling | wt | 0.47 | MC |
| SRR3098741 | seedling | wt | 0.85 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.68 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.37 | MC |
| SRR358791 | seedling | wt | 2.16 | MC |
| SRR358792 | seedling | wt | 1.64 | MC |
| SRR358793 | seedling | wt | 1.46 | MC |
| SRR358794 | seedling | wt | 0.77 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.41 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.59 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.93 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.23 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.31 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.46 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.12 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.34 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.56 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.19 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.06 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.04 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.81 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.53 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.43 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.17 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.79 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.96 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.41 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.47 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.00 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.57 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.36 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.30 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.39 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.46 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.98 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.22 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.31 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.18 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.85 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.97 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.56 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.50 | MC |