| SRR4457258 | 2nd_leaf | DAH28 | 0.40 | MC |
| SRR5560727 | caryopsis | wild_type | 0.59 | MC |
| SRR5560728 | caryopsis | wild_type | 0.40 | MC |
| SRR5560729 | caryopsis | wild_type | 0.30 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.03 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.04 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.59 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.15 | MC |
| SRR7265404 | coleoptile | 2dN | 0.30 | MC |
| SRR7265407 | coleoptile | 3dA | 0.25 | MC |
| SRR7265416 | coleoptile | 4dN | 0.54 | MC |
| SRR7265417 | coleoptile | 4dN | 0.75 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.43 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.48 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.57 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.72 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.81 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.19 | MC |
| SRR7265382 | embryo | 3hA | 0.77 | MC |
| SRR7265383 | embryo | 3hA | 0.52 | MC |
| SRR7265386 | embryo | 3hN | 0.40 | MC |
| SRR7265388 | embryo | 12hA | 1.05 | MC |
| SRR7265389 | embryo | 12hA | 0.76 | MC |
| SRR7265390 | embryo | 12hA | 0.80 | MC |
| SRR7265391 | embryo | 12hN | 0.45 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.76 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.50 | MC |
| SRR8060835 | leaf | wild_type | 1.03 | MC |
| SRR8060836 | leaf | wild_type | 1.01 | MC |
| SRR8060837 | leaf | wild_type | 0.76 | MC |
| SRR8240824 | leaf | wild_type | 0.56 | MC |
| SRR8240826 | leaf | wild_type | 0.55 | MC |
| SRR8240820 | leaf | wild_type | 0.67 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.98 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.70 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.12 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.41 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.01 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.51 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.64 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.54 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.11 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.51 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.60 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.54 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.65 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.65 | MC |
| SRR1761531 | leaf | control | 0.65 | MC |
| SRR6417967 | leaf | H2O_control | 0.64 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.29 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.29 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.49 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.73 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.50 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.43 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR1213693 | leaf | wt | 0.55 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.38 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.95 | MC |
| SRR6502088 | leaf | control | 2.15 | MC |
| SRR6502089 | leaf | control | 2.20 | MC |
| SRR6502090 | leaf | control | 1.50 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.77 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.53 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.40 | MC |
| SRR6502100 | leaf | control | 0.79 | MC |
| SRR6502101 | leaf | control | 1.27 | MC |
| SRR5856927 | leaf | control | 0.45 | MC |
| SRR5856928 | leaf | control | 1.65 | MC |
| SRR5856929 | leaf | control | 0.53 | MC |
| SRR5856930 | leaf | salt | 1.25 | MC |
| SRR5856931 | leaf | salt | 0.47 | MC |
| SRR5856932 | leaf | salt | 1.08 | MC |
| SRR5856933 | leaf | control | 0.86 | MC |
| SRR5856934 | leaf | control | 1.02 | MC |
| SRR5856935 | leaf | control | 1.12 | MC |
| SRR5856936 | leaf | salt | 1.30 | MC |
| SRR5856937 | leaf | salt | 1.81 | MC |
| SRR5856938 | leaf | salt | 0.98 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.26 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.80 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.31 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.84 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 1.25 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582893 | panicle | PM | 0.44 | MC |
| SRR5110429 | panicle | Dawn | 0.49 | MC |
| SRR5110431 | panicle | Dawn | 0.40 | MC |
| SRR4947496 | root | control | 0.82 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.17 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.88 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.59 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.47 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.71 | MC |
| SRR5110446 | panicle | Dusk | 0.44 | MC |
| SRR5110447 | panicle | Dusk | 0.88 | MC |
| SRR5110448 | panicle | Dusk | 0.46 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.56 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.49 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.22 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.02 | MC |
| SRR5126148 | root | "mock,1_day" | 0.61 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.93 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.65 | MC |
| SRR5126155 | root | "mock,7_days" | 0.49 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.40 | MC |
| SRR1213695 | root | wt | 0.26 | MC |
| SRR4947478 | root | control | 0.57 | MC |
| SRR4947481 | root | control | 0.98 | MC |
| SRR4947484 | root | Al | 1.18 | MC |
| SRR4947489 | root | control | 0.59 | MC |
| SRR4947493 | root | Al | 0.82 | MC |
| SRR4947497 | root | control | 0.67 | MC |
| SRR4947500 | root | Al | 0.69 | MC |
| SRR4947504 | root | control | 0.59 | MC |
| SRR4947508 | root | Al | 0.60 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.91 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.60 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.76 | MC |
| SRR6502094 | root | control | 0.51 | MC |
| SRR6502095 | root | control | 0.53 | MC |
| SRR2154082 | seedling | wt | 0.35 | MC |
| SRR2154083 | seedling | wt | 0.62 | MC |
| SRR2154084 | seedling | wt | 0.35 | MC |
| SRR3098741 | seedling | wt | 0.23 | MC |
| SRR3098743 | seedling | wt | 0.50 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.89 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.61 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.71 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.42 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.56 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.42 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.17 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.59 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.78 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.01 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.72 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.64 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.82 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.66 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.62 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.34 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.50 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.32 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.48 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.40 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.31 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.61 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.60 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.48 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.25 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.87 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.43 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.57 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.42 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.70 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.49 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.35 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.27 | MC |