| SRR4457249 | 2nd_leaf | DAH4 | 0.60 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.34 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.49 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.59 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.53 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.74 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.45 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.31 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.25 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.31 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.62 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.16 | MC |
| SRR3745125 | anther | wt | 5.40 | MC |
| SRR3745127 | anther | wt | 5.41 | MC |
| SRR5560728 | caryopsis | wild_type | 2.38 | MC |
| SRR7265403 | coleoptile | 2dN | 0.58 | MC |
| SRR7265404 | coleoptile | 2dN | 1.45 | MC |
| SRR7265405 | coleoptile | 2dN | 0.69 | MC |
| SRR7265406 | coleoptile | 3dA | 0.60 | MC |
| SRR7265407 | coleoptile | 3dA | 0.29 | MC |
| SRR7265410 | coleoptile | 3dN | 2.73 | MC |
| SRR7265411 | coleoptile | 3dN | 0.63 | MC |
| SRR7265415 | coleoptile | 4dN | 0.76 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.05 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.53 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 3.20 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.31 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.98 | MC |
| SRR7265376 | embryo | 1hA | 1.45 | MC |
| SRR7265377 | embryo | 1hA | 1.32 | MC |
| SRR7265378 | embryo | 1hA | 1.59 | MC |
| SRR7265379 | embryo | 1hN | 1.80 | MC |
| SRR7265380 | embryo | 1hN | 2.31 | MC |
| SRR7265381 | embryo | 1hN | 1.58 | MC |
| SRR7265383 | embryo | 3hA | 1.43 | MC |
| SRR7265384 | embryo | 3hA | 3.87 | MC |
| SRR7265385 | embryo | 3hN | 2.63 | MC |
| SRR7265386 | embryo | 3hN | 2.18 | MC |
| SRR7265387 | embryo | 3hN | 1.75 | MC |
| SRR7265388 | embryo | 12hA | 1.81 | MC |
| SRR7265389 | embryo | 12hA | 3.17 | MC |
| SRR7265393 | embryo | 12hN | 0.58 | MC |
| SRR7265394 | embryo | 24hA | 0.69 | MC |
| SRR7265396 | embryo | 24hA | 1.21 | MC |
| SRR7265397 | embryo | 24hN | 1.04 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.25 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.69 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.87 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.28 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.32 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.01 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.00 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.46 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.56 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.00 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.67 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.92 | MC |
| SRR1213691 | flower | wt | 0.29 | MC |
| SRR8060836 | leaf | wild_type | 3.10 | MC |
| SRR8060837 | leaf | wild_type | 2.79 | MC |
| SRR8240825 | leaf | wild_type | 2.07 | MC |
| SRR8240826 | leaf | wild_type | 0.97 | MC |
| SRR8240818 | leaf | wild_type | 0.63 | MC |
| SRR8240820 | leaf | wild_type | 0.63 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.16 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.67 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.49 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.22 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.62 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.85 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.75 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.38 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.65 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.24 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.81 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.31 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.30 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.79 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.42 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.43 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.64 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.62 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.27 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.90 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.05 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.42 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 3.03 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 3.03 | MC |
| SRR1761529 | leaf | drought | 3.03 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.59 | MC |
| SRR6417969 | leaf | H2O_control | 3.26 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.32 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.46 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.73 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.05 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.71 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.01 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.03 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.03 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR1213692 | leaf | wt | 2.69 | MC |
| SRR1213693 | leaf | wt | 0.77 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.84 | MC |
| SRR5856928 | leaf | control | 0.42 | MC |
| SRR5856930 | leaf | salt | 0.20 | MC |
| SRR5856931 | leaf | salt | 0.16 | MC |
| SRR5856932 | leaf | salt | 1.31 | MC |
| SRR5856933 | leaf | control | 1.30 | MC |
| SRR5856935 | leaf | control | 1.55 | MC |
| SRR5856936 | leaf | salt | 0.91 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.86 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.94 | MC |
| SRR6168979 | leaf | none (control) | 0.99 | MC |
| SRR6168980 | leaf | none (control) | 1.64 | MC |
| SRR6168981 | leaf | none (control) | 2.15 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.02 | MC |
| SRR8582889 | panicle | AM | 0.11 | MC |
| SRR5110431 | panicle | Dawn | 1.62 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.01 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.07 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.45 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.76 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.21 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.62 | MC |
| SRR5110446 | panicle | Dusk | 0.47 | MC |
| SRR5110448 | panicle | Dusk | 0.56 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.69 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.42 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.28 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.70 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.75 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.12 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.01 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.47 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.30 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.89 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.90 | MC |
| SRR1633185 | panicle | WT | 4.20 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.78 | MC |
| SRR5126148 | root | "mock,1_day" | 0.96 | MC |
| SRR5126149 | root | "mock,1_day" | 0.71 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.98 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.09 | MC |
| SRR5126155 | root | "mock,7_days" | 0.45 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.00 | MC |
| SRR5126167 | root | "mock,14_days" | 0.26 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.96 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.42 | MC |
| SRR1213695 | root | wt | 3.19 | MC |
| SRR4947498 | root | Al | 2.02 | MC |
| SRR4947506 | root | Al | 0.58 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.38 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.40 | MC |
| SRR6441554 | seedling | wild_type | 1.41 | MC |
| SRR6441555 | seedling | wild_type | 1.46 | MC |
| SRR2154082 | seedling | wt | 0.51 | MC |
| SRR2154083 | seedling | wt | 0.53 | MC |
| SRR2154084 | seedling | wt | 0.32 | MC |
| SRR2154087 | seedling | wt | 0.74 | MC |
| SRR3098743 | seedling | wt | 0.56 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.38 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.53 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.89 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.56 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 5.75 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.40 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.46 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.14 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.71 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.48 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.51 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.09 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.06 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.51 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.60 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.47 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.00 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.20 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.93 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.24 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.01 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.23 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.61 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.05 | MC |