| SRR4457249 | 2nd_leaf | DAH4 | 2.53 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.70 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.86 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.41 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.90 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.05 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.95 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.48 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.38 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 3.06 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.83 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.15 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.74 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.22 | MC |
| SRR5560727 | caryopsis | wild_type | 2.76 | MC |
| SRR7265401 | coleoptile | 2dA | 3.49 | MC |
| SRR7265402 | coleoptile | 2dA | 0.41 | MC |
| SRR7265404 | coleoptile | 2dN | 0.48 | MC |
| SRR7265410 | coleoptile | 3dN | 2.98 | MC |
| SRR7265411 | coleoptile | 3dN | 0.57 | MC |
| SRR7265414 | coleoptile | 4dA | 1.11 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.69 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.49 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.19 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.69 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.65 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.78 | MC |
| SRR7265376 | embryo | 1hA | 0.33 | MC |
| SRR7265377 | embryo | 1hA | 0.90 | MC |
| SRR7265381 | embryo | 1hN | 0.34 | MC |
| SRR7265382 | embryo | 3hA | 1.03 | MC |
| SRR7265388 | embryo | 12hA | 3.22 | MC |
| SRR7265391 | embryo | 12hN | 4.87 | MC |
| SRR7265394 | embryo | 24hA | 2.85 | MC |
| SRR7265395 | embryo | 24hA | 3.66 | MC |
| SRR7265399 | embryo | 24hN | 3.39 | MC |
| SRR2338867 | endosprem | control | 0.71 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.83 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.91 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.76 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.92 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.75 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.76 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.98 | MC |
| SRR4457243 | flag_leaf | DAH36 | 2.12 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.65 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.00 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.10 | MC |
| SRR1213691 | flower | wt | 0.55 | MC |
| SRR8060835 | leaf | wild_type | 2.66 | MC |
| SRR8240825 | leaf | wild_type | 2.04 | MC |
| SRR8240826 | leaf | wild_type | 0.28 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.31 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.63 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.71 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.13 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.48 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.73 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.05 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.72 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.90 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.50 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.38 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.88 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.36 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.24 | MC |
| SRR6417968 | leaf | H2O_control | 2.09 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.90 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.98 | MC |
| SRR1213692 | leaf | wt | 0.61 | MC |
| SRR1213693 | leaf | wt | 1.72 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.17 | MC |
| SRR6502088 | leaf | control | 3.23 | MC |
| SRR6502090 | leaf | control | 2.11 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.40 | MC |
| SRR5856928 | leaf | control | 0.74 | MC |
| SRR5856930 | leaf | salt | 1.23 | MC |
| SRR5856931 | leaf | salt | 0.74 | MC |
| SRR5856932 | leaf | salt | 0.70 | MC |
| SRR5856934 | leaf | control | 0.67 | MC |
| SRR5856935 | leaf | control | 1.12 | MC |
| SRR5856937 | leaf | salt | 0.81 | MC |
| SRR5856938 | leaf | salt | 0.90 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.85 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.09 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.79 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.09 | MC |
| SRR8582888 | panicle | AM | 1.11 | MC |
| SRR8582889 | panicle | AM | 0.48 | MC |
| SRR8582893 | panicle | PM | 4.42 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.26 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.56 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.95 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.56 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.05 | MC |
| SRR5126148 | root | "mock,1_day" | 0.32 | MC |
| SRR5126153 | root | "mock,7_days" | 1.24 | MC |
| SRR5126155 | root | "mock,7_days" | 1.49 | MC |
| SRR5126157 | root | "mock,7_days" | 3.34 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.11 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.39 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.03 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.79 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.13 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.45 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.23 | MC |
| SRR1213695 | root | wt | 2.17 | MC |
| SRR4947478 | root | control | 2.92 | MC |
| SRR4947485 | root | Al | 0.92 | MC |
| SRR4947488 | root | control | 2.42 | MC |
| SRR4947493 | root | Al | 2.17 | MC |
| SRR4947498 | root | Al | 5.49 | MC |
| SRR4947499 | root | Al | 2.30 | MC |
| SRR4947500 | root | Al | 2.32 | MC |
| SRR4947503 | root | control | 3.05 | MC |
| SRR4947507 | root | Al | 1.21 | MC |
| SRR4947508 | root | Al | 2.72 | MC |
| SRR4947509 | root | Al | 1.21 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502108 | root | control | 2.88 | MC |
| SRR6441554 | seedling | wild_type | 1.24 | MC |
| SRR2154086 | seedling | wt | 1.70 | MC |
| SRR2154084 | seedling | wt | 0.81 | MC |
| SRR2154085 | seedling | wt | 2.23 | MC |
| SRR2154087 | seedling | wt | 1.67 | MC |
| SRR3098741 | seedling | wt | 0.70 | MC |
| SRR3098742 | seedling | wt | 1.97 | MC |
| SRR3098743 | seedling | wt | 1.31 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.39 | MC |
| SRR1944583 | seedling | no_treatment | 3.67 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.30 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.94 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.11 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.84 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.33 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.26 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.62 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.82 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.02 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 7.67 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.81 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.70 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.64 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.72 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |