| SRR4457249 | 2nd_leaf | DAH4 | 0.57 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.55 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.36 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.00 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.19 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.59 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.68 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.44 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.39 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.32 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.63 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.30 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.61 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.88 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.69 | MC |
| SRR5560727 | caryopsis | wild_type | 4.78 | MC |
| SRR5560728 | caryopsis | wild_type | 5.26 | MC |
| SRR5560729 | caryopsis | wild_type | 4.84 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.83 | MC |
| SRR7265403 | coleoptile | 2dN | 0.49 | MC |
| SRR7265404 | coleoptile | 2dN | 0.58 | MC |
| SRR7265405 | coleoptile | 2dN | 0.28 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.14 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 2.20 | MC |
| SRR2338867 | endosprem | control | 0.67 | MC |
| SRR2338868 | endosprem | high_temperature | 1.08 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.43 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.51 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.44 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.01 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.26 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.49 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.00 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.47 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.34 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.30 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.13 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.86 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.94 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.82 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.43 | MC |
| SRR8240819 | leaf | wild_type | 0.30 | MC |
| SRR8240820 | leaf | wild_type | 0.95 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.52 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.15 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.26 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.36 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.93 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.65 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.25 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.47 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.49 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.76 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.58 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.76 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.58 | MC |
| SRR1761530 | leaf | control | 0.76 | MC |
| SRR1761531 | leaf | control | 0.58 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.55 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.30 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.62 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.94 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.62 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.34 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.40 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.04 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.23 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.81 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.88 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.24 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.72 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.85 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.14 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.23 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.55 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.24 | MC |
| SRR1213692 | leaf | wt | 1.71 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.37 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.77 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.05 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.99 | MC |
| SRR6502100 | leaf | control | 0.54 | MC |
| SRR5856927 | leaf | control | 0.44 | MC |
| SRR5856928 | leaf | control | 0.94 | MC |
| SRR5856929 | leaf | control | 0.54 | MC |
| SRR5856933 | leaf | control | 0.85 | MC |
| SRR5856934 | leaf | control | 0.58 | MC |
| SRR5856935 | leaf | control | 0.27 | MC |
| SRR5856938 | leaf | salt | 0.17 | MC |
| SRR6168981 | leaf | none (control) | 0.24 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.67 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.85 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.46 | MC |
| SRR5126147 | root | "mock,1_day" | 3.01 | MC |
| SRR5126148 | root | "mock,1_day" | 2.32 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.80 | MC |
| SRR5126165 | root | "mock,14_days" | 3.19 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.78 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.09 | MC |
| SRR4947478 | root | control | 1.11 | MC |
| SRR4947479 | root | control | 0.77 | MC |
| SRR4947482 | root | Al | 1.16 | MC |
| SRR4947483 | root | Al | 1.82 | MC |
| SRR4947484 | root | Al | 4.37 | MC |
| SRR4947487 | root | control | 0.63 | MC |
| SRR4947490 | root | Al | 1.03 | MC |
| SRR4947492 | root | Al | 5.48 | MC |
| SRR4947493 | root | Al | 4.10 | MC |
| SRR4947497 | root | control | 2.52 | MC |
| SRR4947500 | root | Al | 2.83 | MC |
| SRR4947501 | root | Al | 3.11 | MC |
| SRR4947503 | root | control | 1.02 | MC |
| SRR4947506 | root | Al | 1.22 | MC |
| SRR4947507 | root | Al | 0.52 | MC |
| SRR4947508 | root | Al | 3.46 | MC |
| SRR4947509 | root | Al | 3.56 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.62 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.79 | MC |
| SRR6502094 | root | control | 1.59 | MC |
| SRR6502095 | root | control | 0.96 | MC |
| SRR6502096 | root | control | 1.55 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.25 | MC |
| SRR6502106 | root | control | 1.11 | MC |
| SRR6502107 | root | control | 0.99 | MC |
| SRR6502108 | root | control | 2.72 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.67 | MC |
| SRR6441554 | seedling | wild_type | 0.70 | MC |
| SRR6441555 | seedling | wild_type | 0.71 | MC |
| SRR2154086 | seedling | wt | 2.95 | MC |
| SRR2154083 | seedling | wt | 0.47 | MC |
| SRR2154085 | seedling | wt | 1.65 | MC |
| SRR2154087 | seedling | wt | 3.05 | MC |
| SRR3098741 | seedling | wt | 1.45 | MC |
| SRR3098742 | seedling | wt | 0.95 | MC |
| SRR3098743 | seedling | wt | 0.60 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.51 | MC |
| SRR358791 | seedling | wt | 1.07 | MC |
| SRR358793 | seedling | wt | 1.33 | MC |
| SRR358794 | seedling | wt | 1.69 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.73 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.63 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.83 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.04 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.80 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.45 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 3.01 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 3.18 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.36 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.41 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.38 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.52 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.88 | MC |