| SRR4457253 | 2nd_leaf | DAH12 | 0.37 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR358795 | callus | wt | 7.30 | MC |
| SRR358796 | callus | wt | 8.11 | MC |
| SRR358797 | callus | wt | 8.48 | MC |
| SRR6320498 | carpel | wt | 4.63 | MC |
| SRR5560727 | caryopsis | wild_type | 0.31 | MC |
| SRR5560728 | caryopsis | wild_type | 1.99 | MC |
| SRR5560729 | caryopsis | wild_type | 0.82 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.23 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.21 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.40 | MC |
| SRR7265400 | coleoptile | 2dA | 2.27 | MC |
| SRR7265401 | coleoptile | 2dA | 1.98 | MC |
| SRR7265402 | coleoptile | 2dA | 2.52 | MC |
| SRR7265403 | coleoptile | 2dN | 1.19 | MC |
| SRR7265404 | coleoptile | 2dN | 0.99 | MC |
| SRR7265405 | coleoptile | 2dN | 1.17 | MC |
| SRR7265406 | coleoptile | 3dA | 0.43 | MC |
| SRR7265407 | coleoptile | 3dA | 0.44 | MC |
| SRR7265408 | coleoptile | 3dA | 0.44 | MC |
| SRR7265409 | coleoptile | 3dN | 1.00 | MC |
| SRR7265410 | coleoptile | 3dN | 1.04 | MC |
| SRR7265411 | coleoptile | 3dN | 0.84 | MC |
| SRR7265413 | coleoptile | 4dA | 1.34 | MC |
| SRR7265414 | coleoptile | 4dA | 0.66 | MC |
| SRR7265416 | coleoptile | 4dN | 0.59 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.88 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.52 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.50 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.65 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.52 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.53 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.02 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.53 | MC |
| SRR7265376 | embryo | 1hA | 0.95 | MC |
| SRR7265377 | embryo | 1hA | 0.64 | MC |
| SRR7265378 | embryo | 1hA | 1.46 | MC |
| SRR7265379 | embryo | 1hN | 1.01 | MC |
| SRR7265380 | embryo | 1hN | 1.43 | MC |
| SRR7265381 | embryo | 1hN | 2.19 | MC |
| SRR7265382 | embryo | 3hA | 1.39 | MC |
| SRR7265383 | embryo | 3hA | 1.04 | MC |
| SRR7265384 | embryo | 3hA | 1.08 | MC |
| SRR7265385 | embryo | 3hN | 0.95 | MC |
| SRR7265386 | embryo | 3hN | 1.00 | MC |
| SRR7265387 | embryo | 3hN | 0.71 | MC |
| SRR7265389 | embryo | 12hA | 4.86 | MC |
| SRR7265391 | embryo | 12hN | 4.49 | MC |
| SRR7265394 | embryo | 24hA | 3.98 | MC |
| SRR7265395 | embryo | 24hA | 4.34 | MC |
| SRR7265397 | embryo | 24hN | 3.72 | MC |
| SRR7265398 | embryo | 24hN | 4.56 | MC |
| SRR7265399 | embryo | 24hN | 4.44 | MC |
| SRR2338867 | endosprem | control | 0.95 | MC |
| SRR2338868 | endosprem | high_temperature | 0.57 | MC |
| SRR2338869 | endosprem | high_temperature | 2.10 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.90 | MC |
| SRR8060835 | leaf | wild_type | 0.99 | MC |
| SRR8060836 | leaf | wild_type | 1.82 | MC |
| SRR8060837 | leaf | wild_type | 0.35 | MC |
| SRR8240825 | leaf | wild_type | 0.45 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.85 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.88 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.03 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.95 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.82 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.26 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.27 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.47 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.78 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.32 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.78 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.32 | MC |
| SRR1761530 | leaf | control | 0.78 | MC |
| SRR1761531 | leaf | control | 1.32 | MC |
| SRR504365 | leaf | wt | 0.24 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.42 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.49 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.80 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.11 | MC |
| SRR1213693 | leaf | wt | 0.76 | MC |
| SRR5856927 | leaf | control | 1.18 | MC |
| SRR5856928 | leaf | control | 1.45 | MC |
| SRR5856929 | leaf | control | 1.46 | MC |
| SRR5856930 | leaf | salt | 0.19 | MC |
| SRR5856931 | leaf | salt | 0.65 | MC |
| SRR5856936 | leaf | salt | 0.79 | MC |
| SRR5856937 | leaf | salt | 0.70 | MC |
| SRR5856938 | leaf | salt | 1.29 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 4.46 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.77 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.59 | MC |
| SRR6168973 | leaf | none (control) | 0.66 | MC |
| SRR6168974 | leaf | none (control) | 0.70 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.55 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.47 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.42 | MC |
| SRR8582890 | panicle | AM | 0.21 | MC |
| SRR8582891 | panicle | PM | 0.70 | MC |
| SRR5110429 | panicle | Dawn | 3.71 | MC |
| SRR5110430 | panicle | Dawn | 1.36 | MC |
| SRR5110431 | panicle | Dawn | 3.88 | MC |
| SRR5110432 | panicle | Dawn | 3.08 | MC |
| SRR4947496 | root | control | 3.11 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 3.92 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.19 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.08 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.34 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.08 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.39 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.69 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.82 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.69 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.96 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.24 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.39 | MC |
| SRR5110445 | panicle | Dusk | 1.91 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.94 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.50 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.22 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.43 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.87 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.08 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.69 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.30 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.65 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.85 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.15 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.79 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.00 | MC |
| SRR5126147 | root | "mock,1_day" | 3.31 | MC |
| SRR5126148 | root | "mock,1_day" | 2.49 | MC |
| SRR5126149 | root | "mock,1_day" | 1.80 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.95 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.38 | MC |
| SRR5126153 | root | "mock,7_days" | 2.44 | MC |
| SRR5126155 | root | "mock,7_days" | 1.92 | MC |
| SRR5126157 | root | "mock,7_days" | 1.11 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.15 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.83 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.18 | MC |
| SRR5126165 | root | "mock,14_days" | 1.72 | MC |
| SRR5126167 | root | "mock,14_days" | 1.19 | MC |
| SRR5126169 | root | "mock,14_days" | 1.59 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.82 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.53 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.94 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.21 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.94 | MC |
| SRR1213694 | root | wt | 1.55 | MC |
| SRR1213695 | root | wt | 0.77 | MC |
| SRR4947480 | root | control | 2.83 | MC |
| SRR4947484 | root | Al | 3.84 | MC |
| SRR4947485 | root | Al | 4.23 | MC |
| SRR4947487 | root | control | 3.88 | MC |
| SRR4947488 | root | control | 3.11 | MC |
| SRR4947489 | root | control | 4.30 | MC |
| SRR4947490 | root | Al | 3.54 | MC |
| SRR4947492 | root | Al | 4.00 | MC |
| SRR4947494 | root | control | 3.35 | MC |
| SRR4947497 | root | control | 5.62 | MC |
| SRR4947505 | root | control | 5.42 | MC |
| SRR4947506 | root | Al | 4.02 | MC |
| SRR4947508 | root | Al | 4.40 | MC |
| SRR4947509 | root | Al | 3.34 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.52 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.26 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.06 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.34 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.29 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.55 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.82 | MC |
| SRR6441554 | seedling | wild_type | 1.02 | MC |
| SRR2154085 | seedling | wt | 2.03 | MC |
| SRR2154087 | seedling | wt | 3.94 | MC |
| SRR3098742 | seedling | wt | 0.41 | MC |
| SRR3098743 | seedling | wt | 0.32 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.04 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.80 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.27 | MC |
| SRR1944583 | seedling | no_treatment | 0.45 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.58 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.53 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.02 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.25 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.45 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.50 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.81 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.45 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.88 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.58 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.76 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.07 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.64 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.84 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.75 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.34 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.40 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.81 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.58 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 9.52 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.51 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.92 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 7.06 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.02 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.20 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.28 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.45 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.91 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.15 | MC |