| SRR4457249 | 2nd_leaf | DAH4 | 0.56 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.58 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.26 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.70 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.43 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.47 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.27 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.39 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.62 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.53 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.59 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.66 | MC |
| SRR5560727 | caryopsis | wild_type | 0.81 | MC |
| SRR5560728 | caryopsis | wild_type | 0.86 | MC |
| SRR5560729 | caryopsis | wild_type | 0.79 | MC |
| SRR4947495 | root | control | 1.38 | MC |
| SRR7265408 | coleoptile | 3dA | 0.42 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.58 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.28 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.69 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 2.86 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.82 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.11 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.02 | MC |
| SRR7265385 | embryo | 3hN | 0.63 | MC |
| SRR7265387 | embryo | 3hN | 0.27 | MC |
| SRR7265388 | embryo | 12hA | 0.63 | MC |
| SRR7265389 | embryo | 12hA | 0.55 | MC |
| SRR7265395 | embryo | 24hA | 0.70 | MC |
| SRR7265398 | embryo | 24hN | 0.46 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.42 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.38 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.48 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.49 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.53 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.53 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.35 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.58 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.85 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.71 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.99 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.22 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.19 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.47 | MC |
| SRR504365 | leaf | wt | 0.35 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.28 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.40 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.41 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.26 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.33 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.31 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.19 | MC |
| SRR5856927 | leaf | control | 1.72 | MC |
| SRR5856928 | leaf | control | 1.78 | MC |
| SRR5856930 | leaf | salt | 1.27 | MC |
| SRR5856931 | leaf | salt | 0.85 | MC |
| SRR5856932 | leaf | salt | 0.44 | MC |
| SRR5856933 | leaf | control | 1.16 | MC |
| SRR5856934 | leaf | control | 1.35 | MC |
| SRR5856935 | leaf | control | 0.84 | MC |
| SRR5856936 | leaf | salt | 0.88 | MC |
| SRR5856937 | leaf | salt | 1.32 | MC |
| SRR5856938 | leaf | salt | 1.44 | MC |
| SRR5110429 | panicle | Dawn | 0.53 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.39 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.72 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.72 | MC |
| SRR5110446 | panicle | Dusk | 0.82 | MC |
| SRR5110447 | panicle | Dusk | 0.85 | MC |
| SRR5110448 | panicle | Dusk | 0.50 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.26 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.82 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.12 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.92 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.72 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.51 | MC |
| SRR1633182 | panicle | WT | 1.61 | MC |
| SRR1633185 | panicle | WT | 1.72 | MC |
| SRR5126147 | root | "mock,1_day" | 1.26 | MC |
| SRR5126148 | root | "mock,1_day" | 1.17 | MC |
| SRR5126149 | root | "mock,1_day" | 1.00 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.81 | MC |
| SRR5126153 | root | "mock,7_days" | 0.88 | MC |
| SRR5126155 | root | "mock,7_days" | 0.63 | MC |
| SRR5126157 | root | "mock,7_days" | 0.63 | MC |
| SRR5126167 | root | "mock,14_days" | 0.32 | MC |
| SRR5126169 | root | "mock,14_days" | 0.43 | MC |
| SRR1213695 | root | wt | 0.15 | MC |
| SRR4947478 | root | control | 1.45 | MC |
| SRR4947479 | root | control | 1.41 | MC |
| SRR4947481 | root | control | 0.88 | MC |
| SRR4947482 | root | Al | 1.90 | MC |
| SRR4947483 | root | Al | 1.11 | MC |
| SRR4947487 | root | control | 1.29 | MC |
| SRR4947489 | root | control | 0.70 | MC |
| SRR4947490 | root | Al | 1.28 | MC |
| SRR4947491 | root | Al | 3.15 | MC |
| SRR4947494 | root | control | 2.66 | MC |
| SRR4947498 | root | Al | 2.70 | MC |
| SRR4947499 | root | Al | 2.79 | MC |
| SRR4947502 | root | control | 3.73 | MC |
| SRR4947503 | root | control | 2.35 | MC |
| SRR4947506 | root | Al | 0.84 | MC |
| SRR4947507 | root | Al | 2.37 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.38 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.22 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.34 | MC |
| SRR2154086 | seedling | wt | 0.59 | MC |
| SRR2154082 | seedling | wt | 0.64 | MC |
| SRR2154083 | seedling | wt | 0.48 | MC |
| SRR2154084 | seedling | wt | 1.08 | MC |
| SRR3098743 | seedling | wt | 0.17 | MC |
| SRR358793 | seedling | wt | 0.55 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.01 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.51 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.83 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.00 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.12 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.67 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.28 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.97 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.54 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.20 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.47 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.33 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.74 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.63 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.36 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.51 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.42 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.66 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.36 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.47 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.81 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.69 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.23 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.77 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.89 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.27 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.02 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.67 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |