| SRR4457251 | 2nd_leaf | DAH4 | 2.77 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.07 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.52 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.45 | MC |
| SRR5560727 | caryopsis | wild_type | 0.51 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.61 | MC |
| SRR7265400 | coleoptile | 2dA | 0.33 | MC |
| SRR7265401 | coleoptile | 2dA | 0.30 | MC |
| SRR7265403 | coleoptile | 2dN | 0.59 | MC |
| SRR7265404 | coleoptile | 2dN | 0.43 | MC |
| SRR7265405 | coleoptile | 2dN | 0.78 | MC |
| SRR7265406 | coleoptile | 3dA | 0.46 | MC |
| SRR7265407 | coleoptile | 3dA | 1.10 | MC |
| SRR7265409 | coleoptile | 3dN | 0.58 | MC |
| SRR7265410 | coleoptile | 3dN | 0.35 | MC |
| SRR7265411 | coleoptile | 3dN | 0.32 | MC |
| SRR7265415 | coleoptile | 4dN | 0.69 | MC |
| SRR7265416 | coleoptile | 4dN | 0.56 | MC |
| SRR7265417 | coleoptile | 4dN | 0.46 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.88 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.46 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.28 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.60 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.25 | MC |
| SRR7265376 | embryo | 1hA | 0.34 | MC |
| SRR7265378 | embryo | 1hA | 0.49 | MC |
| SRR7265379 | embryo | 1hN | 0.29 | MC |
| SRR7265382 | embryo | 3hA | 1.98 | MC |
| SRR7265383 | embryo | 3hA | 1.38 | MC |
| SRR7265384 | embryo | 3hA | 1.38 | MC |
| SRR7265385 | embryo | 3hN | 0.80 | MC |
| SRR7265386 | embryo | 3hN | 0.39 | MC |
| SRR7265387 | embryo | 3hN | 0.93 | MC |
| SRR7265388 | embryo | 12hA | 1.03 | MC |
| SRR7265389 | embryo | 12hA | 1.14 | MC |
| SRR7265390 | embryo | 12hA | 1.03 | MC |
| SRR7265391 | embryo | 12hN | 1.76 | MC |
| SRR7265392 | embryo | 12hN | 1.63 | MC |
| SRR7265393 | embryo | 12hN | 1.53 | MC |
| SRR7265394 | embryo | 24hA | 0.74 | MC |
| SRR7265395 | embryo | 24hA | 0.48 | MC |
| SRR7265397 | embryo | 24hN | 1.53 | MC |
| SRR7265398 | embryo | 24hN | 0.66 | MC |
| SRR7265399 | embryo | 24hN | 0.59 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.99 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.07 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.33 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.36 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.05 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.88 | MC |
| SRR4457242 | flag_leaf | DAH28 | 3.05 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.37 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.88 | MC |
| SRR8240819 | leaf | wild_type | 1.22 | MC |
| SRR8240820 | leaf | wild_type | 0.63 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.22 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.32 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.74 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.57 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.22 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.91 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.53 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.23 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.79 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.18 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.00 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.31 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.04 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.14 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.39 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.39 | MC |
| SRR1761528 | leaf | drought | 3.39 | MC |
| SRR504365 | leaf | wt | 0.34 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.79 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.77 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.61 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 3.12 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.80 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.44 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.01 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.76 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.68 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.68 | MC |
| SRR1213693 | leaf | wt | 1.44 | MC |
| SRR6502102 | leaf | control | 0.83 | MC |
| SRR5856931 | leaf | salt | 0.16 | MC |
| SRR5856933 | leaf | control | 0.19 | MC |
| SRR5856934 | leaf | control | 0.22 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.26 | MC |
| SRR6168973 | leaf | none (control) | 0.99 | MC |
| SRR6168974 | leaf | none (control) | 0.56 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.68 | MC |
| SRR6168980 | leaf | none (control) | 0.68 | MC |
| SRR6168981 | leaf | none (control) | 0.41 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.58 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.50 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.36 | MC |
| SRR8582888 | panicle | AM | 0.31 | MC |
| SRR8582893 | panicle | PM | 2.18 | MC |
| SRR5110431 | panicle | Dawn | 0.39 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.28 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.27 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.52 | MC |
| SRR5126148 | root | "mock,1_day" | 2.17 | MC |
| SRR5126149 | root | "mock,1_day" | 3.83 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.85 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.18 | MC |
| SRR5126153 | root | "mock,7_days" | 0.90 | MC |
| SRR5126155 | root | "mock,7_days" | 1.17 | MC |
| SRR5126157 | root | "mock,7_days" | 1.17 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.11 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.20 | MC |
| SRR5126165 | root | "mock,14_days" | 1.42 | MC |
| SRR5126169 | root | "mock,14_days" | 0.29 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.97 | MC |
| SRR1213695 | root | wt | 0.37 | MC |
| SRR2154086 | seedling | wt | 1.10 | MC |
| SRR2154085 | seedling | wt | 1.15 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.32 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.80 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.78 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.61 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.49 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.86 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.05 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.70 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.79 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.79 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.32 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.28 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.35 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.39 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.42 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.45 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.27 | MC |