| SRR3745125 | anther | wt | 2.07 | MC |
| SRR3745126 | anther | wt | 2.70 | MC |
| SRR3745127 | anther | wt | 2.21 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.51 | MC |
| SRR7265412 | coleoptile | 4dA | 0.92 | MC |
| SRR7265413 | coleoptile | 4dA | 1.49 | MC |
| SRR7265414 | coleoptile | 4dA | 1.52 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.47 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.97 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.64 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.49 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.70 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.41 | MC |
| SRR976168 | flag_leaf | wild_type | 1.67 | MC |
| SRR1213691 | flower | wt | 0.45 | MC |
| SRR8060835 | leaf | wild_type | 1.26 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR8240824 | leaf | wild_type | 0.37 | MC |
| SRR8240818 | leaf | wild_type | 0.26 | MC |
| SRR8240819 | leaf | wild_type | 0.33 | MC |
| SRR8240820 | leaf | wild_type | 0.58 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.38 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.43 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.47 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.45 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.58 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.50 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.82 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.51 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.40 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.87 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.70 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.31 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.24 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.66 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.57 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.57 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.48 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.84 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.64 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.62 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.41 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.58 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.69 | MC |
| SRR1213693 | leaf | wt | 0.85 | MC |
| SRR6502100 | leaf | control | 0.32 | MC |
| SRR5856927 | leaf | control | 0.38 | MC |
| SRR5856929 | leaf | control | 1.67 | MC |
| SRR5856931 | leaf | salt | 1.61 | MC |
| SRR5856932 | leaf | salt | 0.38 | MC |
| SRR5856933 | leaf | control | 2.06 | MC |
| SRR5856935 | leaf | control | 1.25 | MC |
| SRR5856936 | leaf | salt | 0.70 | MC |
| SRR5856937 | leaf | salt | 0.59 | MC |
| SRR5856938 | leaf | salt | 1.05 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.49 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.43 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 6.66 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 6.22 | MC |
| SRR6168981 | leaf | none (control) | 0.21 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.51 | MC |
| SRR5110429 | panicle | Dawn | 0.48 | MC |
| SRR4947496 | root | control | 0.93 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.62 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.35 | MC |
| SRR5110446 | panicle | Dusk | 0.37 | MC |
| SRR5110447 | panicle | Dusk | 0.45 | MC |
| SRR5110448 | panicle | Dusk | 0.46 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.45 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.53 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.70 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.87 | MC |
| SRR1633185 | panicle | WT | 0.44 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.21 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.67 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.45 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.20 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.64 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.48 | MC |
| SRR5126147 | root | "mock,1_day" | 0.62 | MC |
| SRR5126148 | root | "mock,1_day" | 0.65 | MC |
| SRR5126149 | root | "mock,1_day" | 0.51 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.79 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126153 | root | "mock,7_days" | 0.67 | MC |
| SRR5126155 | root | "mock,7_days" | 0.96 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.92 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.66 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.21 | MC |
| SRR5126165 | root | "mock,14_days" | 0.62 | MC |
| SRR5126167 | root | "mock,14_days" | 2.07 | MC |
| SRR5126169 | root | "mock,14_days" | 0.50 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.39 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.43 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.22 | MC |
| SRR1213695 | root | wt | 0.27 | MC |
| SRR4947478 | root | control | 0.90 | MC |
| SRR4947479 | root | control | 0.87 | MC |
| SRR4947480 | root | control | 1.72 | MC |
| SRR4947482 | root | Al | 0.62 | MC |
| SRR4947483 | root | Al | 1.55 | MC |
| SRR4947484 | root | Al | 1.42 | MC |
| SRR4947485 | root | Al | 0.82 | MC |
| SRR4947487 | root | control | 0.67 | MC |
| SRR4947489 | root | control | 0.84 | MC |
| SRR4947490 | root | Al | 0.48 | MC |
| SRR4947491 | root | Al | 2.08 | MC |
| SRR4947492 | root | Al | 1.55 | MC |
| SRR4947493 | root | Al | 0.91 | MC |
| SRR4947494 | root | control | 0.69 | MC |
| SRR4947497 | root | control | 0.96 | MC |
| SRR4947498 | root | Al | 1.17 | MC |
| SRR4947499 | root | Al | 1.36 | MC |
| SRR4947500 | root | Al | 1.14 | MC |
| SRR4947501 | root | Al | 0.71 | MC |
| SRR4947503 | root | control | 0.62 | MC |
| SRR4947504 | root | control | 0.81 | MC |
| SRR4947507 | root | Al | 0.84 | MC |
| SRR4947508 | root | Al | 0.69 | MC |
| SRR4947509 | root | Al | 0.65 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.63 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.14 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.95 | MC |
| SRR6502094 | root | control | 2.38 | MC |
| SRR6502095 | root | control | 1.41 | MC |
| SRR6502096 | root | control | 3.55 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.68 | MC |
| SRR6502104 | root | 100 mM NaCl | 2.34 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.72 | MC |
| SRR6502106 | root | control | 3.16 | MC |
| SRR6502107 | root | control | 2.08 | MC |
| SRR6502108 | root | control | 3.99 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.39 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.92 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.53 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.67 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.60 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.27 | MC |
| SRR6441554 | seedling | wild_type | 1.96 | MC |
| SRR6441555 | seedling | wild_type | 1.73 | MC |
| SRR2154086 | seedling | wt | 0.97 | MC |
| SRR2154082 | seedling | wt | 1.87 | MC |
| SRR2154084 | seedling | wt | 0.29 | MC |
| SRR2154085 | seedling | wt | 1.77 | MC |
| SRR2154087 | seedling | wt | 0.57 | MC |
| SRR3098741 | seedling | wt | 0.24 | MC |
| SRR3098743 | seedling | wt | 0.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.02 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.48 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.81 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.60 | MC |
| SRR1944583 | seedling | no_treatment | 0.41 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.59 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.38 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.19 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.33 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.00 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.28 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.25 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.94 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.44 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.52 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.31 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.66 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.22 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.30 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.68 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.53 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.76 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.36 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.64 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.61 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.72 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.26 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.08 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.62 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.75 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.91 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.76 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 1.96 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.94 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.98 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.05 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.18 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.04 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.02 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.84 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.71 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.63 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.93 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.78 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.83 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.37 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.47 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.71 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.63 | MC |