| SRR4457250 | 2nd_leaf | DAH4 | 2.66 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.54 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.41 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 4.07 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.77 | MC |
| SRR3745126 | anther | wt | 4.44 | MC |
| SRR5560729 | caryopsis | wild_type | 3.88 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.64 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.58 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 3.36 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 3.58 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 4.27 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.66 | MC |
| SRR7265378 | embryo | 1hA | 2.37 | MC |
| SRR7265383 | embryo | 3hA | 3.91 | MC |
| SRR2338868 | endosprem | high_temperature | 2.34 | MC |
| SRR976168 | flag_leaf | wild_type | 2.68 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.65 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.45 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.31 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.32 | MC |
| SRR4457239 | flag_leaf | DAH20 | 4.27 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.70 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.55 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.88 | MC |
| SRR8060835 | leaf | wild_type | 1.81 | MC |
| SRR8060836 | leaf | wild_type | 1.03 | MC |
| SRR8240825 | leaf | wild_type | 0.42 | MC |
| SRR8240826 | leaf | wild_type | 0.29 | MC |
| SRR8240819 | leaf | wild_type | 0.34 | MC |
| SRR8240820 | leaf | wild_type | 0.71 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.98 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.50 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.44 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.13 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.38 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.73 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.97 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.98 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.97 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.98 | MC |
| SRR1761528 | leaf | drought | 4.97 | MC |
| SRR1761530 | leaf | control | 3.98 | MC |
| SRR504365 | leaf | wt | 3.03 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.47 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.37 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.18 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.28 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.23 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.01 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.26 | MC |
| SRR6502100 | leaf | control | 4.47 | MC |
| SRR5856927 | leaf | control | 1.35 | MC |
| SRR5856929 | leaf | control | 1.54 | MC |
| SRR5856933 | leaf | control | 1.50 | MC |
| SRR5856934 | leaf | control | 1.32 | MC |
| SRR5856936 | leaf | salt | 0.68 | MC |
| SRR5856937 | leaf | salt | 1.06 | MC |
| SRR5856938 | leaf | salt | 1.85 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.34 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.69 | MC |
| SRR6168973 | leaf | none (control) | 4.12 | MC |
| SRR6168975 | leaf | none (control) | 0.96 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.87 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 4.83 | MC |
| SRR6168979 | leaf | none (control) | 0.58 | MC |
| SRR8582888 | panicle | AM | 1.34 | MC |
| SRR8582891 | panicle | PM | 4.78 | MC |
| SRR8582892 | panicle | PM | 7.18 | MC |
| SRR8582893 | panicle | PM | 3.49 | MC |
| SRR5110430 | panicle | Dawn | 3.54 | MC |
| SRR4947496 | root | control | 3.73 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.47 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.09 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.12 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.76 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.58 | MC |
| SRR5110447 | panicle | Dusk | 3.56 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.24 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.68 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.44 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.13 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.28 | MC |
| SRR1633182 | panicle | WT | 4.14 | MC |
| SRR1633185 | panicle | WT | 4.54 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.90 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.46 | MC |
| SRR5126147 | root | "mock,1_day" | 1.72 | MC |
| SRR5126148 | root | "mock,1_day" | 2.14 | MC |
| SRR5126149 | root | "mock,1_day" | 2.26 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.12 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.36 | MC |
| SRR5126153 | root | "mock,7_days" | 2.10 | MC |
| SRR5126155 | root | "mock,7_days" | 2.97 | MC |
| SRR5126157 | root | "mock,7_days" | 5.15 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.31 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.96 | MC |
| SRR5126165 | root | "mock,14_days" | 4.39 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.58 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.81 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.94 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.14 | MC |
| SRR4947484 | root | Al | 2.06 | MC |
| SRR4947485 | root | Al | 3.91 | MC |
| SRR4947488 | root | control | 3.49 | MC |
| SRR4947489 | root | control | 1.59 | MC |
| SRR4947491 | root | Al | 2.99 | MC |
| SRR4947492 | root | Al | 2.55 | MC |
| SRR4947493 | root | Al | 2.66 | MC |
| SRR4947502 | root | control | 4.67 | MC |
| SRR4947503 | root | control | 4.18 | MC |
| SRR4947506 | root | Al | 3.10 | MC |
| SRR4947507 | root | Al | 5.69 | MC |
| SRR6441554 | seedling | wild_type | 1.14 | MC |
| SRR6441555 | seedling | wild_type | 1.42 | MC |
| SRR3098741 | seedling | wt | 1.92 | MC |
| SRR3098742 | seedling | wt | 0.69 | MC |
| SRR3098743 | seedling | wt | 1.57 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.69 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.02 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.66 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.84 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 4.20 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.82 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.86 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 10.67 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 8.01 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.73 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 4.84 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 7.92 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.04 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.71 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.17 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.38 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.90 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.14 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 4.71 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 3.38 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.42 | MC |