| SRR4457251 | 2nd_leaf | DAH4 | 1.93 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.34 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.98 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.92 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.77 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.78 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.17 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.46 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.77 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.74 | MC |
| SRR3745126 | anther | wt | 4.13 | MC |
| SRR3745127 | anther | wt | 2.54 | MC |
| SRR6320498 | carpel | wt | 1.83 | MC |
| SRR5560727 | caryopsis | wild_type | 1.20 | MC |
| SRR5560728 | caryopsis | wild_type | 2.29 | MC |
| SRR5560729 | caryopsis | wild_type | 2.89 | MC |
| SRR7265408 | coleoptile | 3dA | 2.08 | MC |
| SRR7265409 | coleoptile | 3dN | 2.83 | MC |
| SRR7265411 | coleoptile | 3dN | 3.27 | MC |
| SRR7265412 | coleoptile | 4dA | 1.78 | MC |
| SRR7265413 | coleoptile | 4dA | 4.12 | MC |
| SRR7265414 | coleoptile | 4dA | 2.31 | MC |
| SRR7265415 | coleoptile | 4dN | 4.09 | MC |
| SRR7265416 | coleoptile | 4dN | 4.18 | MC |
| SRR7265417 | coleoptile | 4dN | 3.48 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.23 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.19 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.80 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.60 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.52 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR7265382 | embryo | 3hA | 4.82 | MC |
| SRR7265393 | embryo | 12hN | 4.63 | MC |
| SRR7265397 | embryo | 24hN | 4.41 | MC |
| SRR7265398 | embryo | 24hN | 4.09 | MC |
| SRR2338868 | endosprem | high_temperature | 0.84 | MC |
| SRR2338869 | endosprem | high_temperature | 0.82 | MC |
| SRR976168 | flag_leaf | wild_type | 1.25 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.32 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.36 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.40 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.23 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.22 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.48 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.58 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.92 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.99 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.03 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.77 | MC |
| SRR8240826 | leaf | wild_type | 0.27 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.11 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.29 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.90 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.22 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.19 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.10 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.62 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.23 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.89 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.94 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.78 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.79 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.09 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.97 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.42 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.89 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.80 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.06 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.21 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.41 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.70 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.02 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.24 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.72 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.49 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.97 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.23 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.96 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.08 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.90 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.40 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.54 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.90 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.40 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.54 | MC |
| SRR1761528 | leaf | drought | 4.90 | MC |
| SRR1761530 | leaf | control | 4.40 | MC |
| SRR1761531 | leaf | control | 4.54 | MC |
| SRR504365 | leaf | wt | 2.93 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.08 | MC |
| SRR6417967 | leaf | H2O_control | 1.27 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.43 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.38 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.51 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.30 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.73 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.99 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.09 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 4.21 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.72 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.34 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.44 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.53 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.49 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.42 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.26 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.10 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.68 | MC |
| SRR1213692 | leaf | wt | 4.12 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.38 | MC |
| SRR6502090 | leaf | control | 1.90 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.13 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.64 | MC |
| SRR6502100 | leaf | control | 1.06 | MC |
| SRR6502102 | leaf | control | 2.73 | MC |
| SRR5856932 | leaf | salt | 0.28 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.99 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.57 | MC |
| SRR6168973 | leaf | none (control) | 0.37 | MC |
| SRR6168974 | leaf | none (control) | 1.38 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.48 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.72 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.40 | MC |
| SRR6168980 | leaf | none (control) | 0.35 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR8582888 | panicle | AM | 1.09 | MC |
| SRR8582892 | panicle | PM | 6.43 | MC |
| SRR5110429 | panicle | Dawn | 3.36 | MC |
| SRR5110430 | panicle | Dawn | 3.10 | MC |
| SRR5110431 | panicle | Dawn | 0.50 | MC |
| SRR5110432 | panicle | Dawn | 3.04 | MC |
| SRR4947496 | root | control | 2.41 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.58 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.61 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.87 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.33 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.75 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.49 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.87 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.56 | MC |
| SRR5110445 | panicle | Dusk | 1.65 | MC |
| SRR5110447 | panicle | Dusk | 2.80 | MC |
| SRR5110448 | panicle | Dusk | 1.15 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.24 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.45 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.54 | MC |
| SRR5110452 | panicle | Dawn + 14h | 2.33 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.71 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.00 | MC |
| SRR5110460 | panicle | Dawn + 21h | 2.85 | MC |
| SRR1633182 | panicle | WT | 3.91 | MC |
| SRR1633185 | panicle | WT | 4.73 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.02 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.33 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.57 | MC |
| SRR5126147 | root | "mock,1_day" | 2.01 | MC |
| SRR5126148 | root | "mock,1_day" | 2.14 | MC |
| SRR5126149 | root | "mock,1_day" | 0.77 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.44 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.24 | MC |
| SRR5126153 | root | "mock,7_days" | 1.14 | MC |
| SRR5126155 | root | "mock,7_days" | 1.63 | MC |
| SRR5126157 | root | "mock,7_days" | 1.31 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.83 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.89 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.89 | MC |
| SRR5126165 | root | "mock,14_days" | 2.02 | MC |
| SRR5126167 | root | "mock,14_days" | 1.46 | MC |
| SRR5126169 | root | "mock,14_days" | 2.58 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.16 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.83 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.79 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.46 | MC |
| SRR4947478 | root | control | 3.65 | MC |
| SRR4947479 | root | control | 1.75 | MC |
| SRR4947480 | root | control | 0.49 | MC |
| SRR4947481 | root | control | 4.79 | MC |
| SRR4947483 | root | Al | 3.46 | MC |
| SRR4947484 | root | Al | 3.86 | MC |
| SRR4947485 | root | Al | 4.96 | MC |
| SRR4947489 | root | control | 3.99 | MC |
| SRR4947490 | root | Al | 1.65 | MC |
| SRR4947492 | root | Al | 5.68 | MC |
| SRR4947494 | root | control | 1.32 | MC |
| SRR4947497 | root | control | 4.77 | MC |
| SRR4947499 | root | Al | 4.76 | MC |
| SRR4947500 | root | Al | 3.70 | MC |
| SRR4947501 | root | Al | 5.01 | MC |
| SRR4947502 | root | control | 1.32 | MC |
| SRR4947503 | root | control | 2.81 | MC |
| SRR4947504 | root | control | 3.17 | MC |
| SRR4947505 | root | control | 5.25 | MC |
| SRR4947506 | root | Al | 3.79 | MC |
| SRR4947507 | root | Al | 2.01 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.48 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.17 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.76 | MC |
| SRR6502106 | root | control | 4.13 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.56 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR6441555 | seedling | wild_type | 0.69 | MC |
| SRR2154086 | seedling | wt | 4.07 | MC |
| SRR2154082 | seedling | wt | 2.91 | MC |
| SRR2154083 | seedling | wt | 0.47 | MC |
| SRR2154084 | seedling | wt | 3.23 | MC |
| SRR2154085 | seedling | wt | 1.63 | MC |
| SRR2154087 | seedling | wt | 2.27 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.48 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.06 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.49 | MC |
| SRR1944583 | seedling | no_treatment | 2.38 | MC |
| SRR358791 | seedling | wt | 6.37 | MC |
| SRR358792 | seedling | wt | 6.62 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.58 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.64 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.82 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.64 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.16 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.39 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.43 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.89 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.13 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.32 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.27 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.01 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.87 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.34 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.14 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.19 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.59 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.11 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.35 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.72 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.39 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.40 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.45 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.54 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.72 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.00 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.21 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.39 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.75 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.65 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.72 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 6.48 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.81 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.91 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.02 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 8.67 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 7.31 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.01 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.77 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.46 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.97 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.93 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.12 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.35 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.97 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.84 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.31 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.63 | MC |