| SRR6320473 | carpel | wt | 5.21 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.94 | MC |
| SRR4947495 | root | control | 1.23 | MC |
| SRR7265402 | coleoptile | 2dA | 2.52 | MC |
| SRR7265408 | coleoptile | 3dA | 2.00 | MC |
| SRR7265409 | coleoptile | 3dN | 3.08 | MC |
| SRR7265412 | coleoptile | 4dA | 1.80 | MC |
| SRR7265414 | coleoptile | 4dA | 2.36 | MC |
| SRR7265415 | coleoptile | 4dN | 3.24 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.74 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.92 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.72 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.67 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 3.27 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.50 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 3.22 | MC |
| SRR7265382 | embryo | 3hA | 3.35 | MC |
| SRR7265383 | embryo | 3hA | 3.45 | MC |
| SRR7265385 | embryo | 3hN | 4.15 | MC |
| SRR7265389 | embryo | 12hA | 3.18 | MC |
| SRR7265390 | embryo | 12hA | 3.91 | MC |
| SRR7265391 | embryo | 12hN | 3.79 | MC |
| SRR7265392 | embryo | 12hN | 4.31 | MC |
| SRR7265393 | embryo | 12hN | 2.30 | MC |
| SRR7265394 | embryo | 24hA | 2.88 | MC |
| SRR7265396 | embryo | 24hA | 4.28 | MC |
| SRR7265397 | embryo | 24hN | 3.95 | MC |
| SRR7265398 | embryo | 24hN | 3.01 | MC |
| SRR7265399 | embryo | 24hN | 4.43 | MC |
| SRR2338867 | endosprem | control | 1.45 | MC |
| SRR2338868 | endosprem | high_temperature | 1.04 | MC |
| SRR8240818 | leaf | wild_type | 0.45 | MC |
| SRR8240819 | leaf | wild_type | 0.35 | MC |
| SRR8240820 | leaf | wild_type | 0.81 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.69 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.51 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.80 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.25 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.97 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.68 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.95 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.85 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.79 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.51 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.97 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.11 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.21 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.82 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.35 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.71 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 2.13 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.57 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.53 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.92 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.96 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.04 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.41 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.71 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.22 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.16 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.24 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.39 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.33 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.61 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.18 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.73 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.12 | MC |
| SRR504365 | leaf | wt | 3.30 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.79 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.57 | MC |
| SRR6417967 | leaf | H2O_control | 2.04 | MC |
| SRR6417968 | leaf | H2O_control | 0.94 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.04 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.85 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.26 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.12 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.36 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.69 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.59 | MC |
| SRR1213692 | leaf | wt | 2.87 | MC |
| SRR1213693 | leaf | wt | 1.83 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.98 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.21 | MC |
| SRR5856927 | leaf | control | 1.49 | MC |
| SRR5856928 | leaf | control | 2.16 | MC |
| SRR5856930 | leaf | salt | 0.51 | MC |
| SRR5856931 | leaf | salt | 0.90 | MC |
| SRR5856932 | leaf | salt | 1.49 | MC |
| SRR5856936 | leaf | salt | 0.86 | MC |
| SRR5856937 | leaf | salt | 0.90 | MC |
| SRR6168980 | leaf | none (control) | 0.56 | MC |
| SRR6168981 | leaf | none (control) | 2.37 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.40 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.80 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.49 | MC |
| SRR8582888 | panicle | AM | 1.70 | MC |
| SRR8582889 | panicle | AM | 1.55 | MC |
| SRR8582890 | panicle | AM | 2.51 | MC |
| SRR8582891 | panicle | PM | 5.83 | MC |
| SRR8582892 | panicle | PM | 5.17 | MC |
| SRR4947496 | root | control | 1.06 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.45 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.57 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.24 | MC |
| SRR5110440 | panicle | Dawn + 7h | 5.30 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 4.33 | MC |
| SRR5110449 | panicle | Dawn + 14h | 5.88 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.60 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.04 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.03 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.02 | MC |
| SRR5126148 | root | "mock,1_day" | 3.67 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 4.11 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.81 | MC |
| SRR5126155 | root | "mock,7_days" | 3.55 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.96 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.65 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.32 | MC |
| SRR5126169 | root | "mock,14_days" | 3.90 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 3.25 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.04 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.56 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.76 | MC |
| SRR1213695 | root | wt | 2.87 | MC |
| SRR4947478 | root | control | 1.23 | MC |
| SRR4947479 | root | control | 1.25 | MC |
| SRR4947480 | root | control | 3.04 | MC |
| SRR4947481 | root | control | 2.19 | MC |
| SRR4947483 | root | Al | 1.27 | MC |
| SRR4947484 | root | Al | 2.97 | MC |
| SRR4947485 | root | Al | 1.36 | MC |
| SRR4947487 | root | control | 1.14 | MC |
| SRR4947488 | root | control | 2.29 | MC |
| SRR4947489 | root | control | 3.34 | MC |
| SRR4947490 | root | Al | 2.09 | MC |
| SRR4947492 | root | Al | 3.72 | MC |
| SRR4947493 | root | Al | 2.55 | MC |
| SRR4947497 | root | control | 5.46 | MC |
| SRR4947498 | root | Al | 2.55 | MC |
| SRR4947499 | root | Al | 2.33 | MC |
| SRR4947500 | root | Al | 4.32 | MC |
| SRR4947502 | root | control | 3.32 | MC |
| SRR4947503 | root | control | 2.28 | MC |
| SRR4947504 | root | control | 1.37 | MC |
| SRR4947505 | root | control | 2.36 | MC |
| SRR4947507 | root | Al | 2.38 | MC |
| SRR4947508 | root | Al | 3.75 | MC |
| SRR4947509 | root | Al | 1.24 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.86 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.02 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.28 | MC |
| SRR6441554 | seedling | wild_type | 1.87 | MC |
| SRR6441555 | seedling | wild_type | 1.18 | MC |
| SRR2154086 | seedling | wt | 3.47 | MC |
| SRR2154083 | seedling | wt | 3.20 | MC |
| SRR3098741 | seedling | wt | 2.55 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.25 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.42 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.27 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.55 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.04 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.71 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 3.41 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.25 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.38 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.65 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.38 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.25 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.32 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.10 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.27 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.39 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.68 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.62 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 6.87 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 7.04 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.76 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.98 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.91 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.78 | MC |