| SRR4457250 | 2nd_leaf | DAH4 | 1.22 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.17 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.96 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.48 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.73 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.40 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.48 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.52 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.01 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.05 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.83 | MC |
| SRR3745125 | anther | wt | 2.33 | MC |
| SRR3745126 | anther | wt | 2.70 | MC |
| SRR3745127 | anther | wt | 1.47 | MC |
| SRR358795 | callus | wt | 2.31 | MC |
| SRR358796 | callus | wt | 2.21 | MC |
| SRR358797 | callus | wt | 3.83 | MC |
| SRR358798 | callus | wt | 1.84 | MC |
| SRR5560727 | caryopsis | wild_type | 1.80 | MC |
| SRR5560728 | caryopsis | wild_type | 2.65 | MC |
| SRR5560729 | caryopsis | wild_type | 3.91 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.37 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.34 | MC |
| SRR7265413 | coleoptile | 4dA | 3.29 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.30 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.39 | MC |
| SRR7265375 | embryo | dry seed 0 h | 1.45 | MC |
| SRR2338867 | endosprem | control | 1.21 | MC |
| SRR2338868 | endosprem | high_temperature | 0.47 | MC |
| SRR4457231 | flag_leaf | DAH4 | 1.28 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.63 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.71 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.40 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.51 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.79 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.30 | MC |
| SRR8240820 | leaf | wild_type | 0.39 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.28 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.66 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.43 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.52 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.73 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.24 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.64 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.93 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.96 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.51 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.64 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.37 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.48 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.12 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 3.00 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.78 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.54 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.61 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.36 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.09 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.54 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.67 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.49 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.35 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.44 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.62 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.93 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.13 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.63 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.13 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.63 | MC |
| SRR1761530 | leaf | control | 2.13 | MC |
| SRR1761531 | leaf | control | 1.63 | MC |
| SRR504365 | leaf | wt | 1.19 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.34 | MC |
| SRR6417967 | leaf | H2O_control | 3.78 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.48 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.43 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.54 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.84 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.54 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.38 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.22 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.84 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.09 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.75 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.31 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 3.78 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.08 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.19 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.68 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.46 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.09 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.16 | MC |
| SRR1213692 | leaf | wt | 3.98 | MC |
| SRR1213693 | leaf | wt | 3.52 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.07 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.23 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 2.10 | MC |
| SRR6502088 | leaf | control | 2.25 | MC |
| SRR6502089 | leaf | control | 2.83 | MC |
| SRR6502090 | leaf | control | 0.83 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.02 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.97 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.68 | MC |
| SRR6502100 | leaf | control | 1.78 | MC |
| SRR6502101 | leaf | control | 0.84 | MC |
| SRR6502102 | leaf | control | 2.45 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.12 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.62 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.73 | MC |
| SRR8582888 | panicle | AM | 0.83 | MC |
| SRR8582889 | panicle | AM | 0.98 | MC |
| SRR8582890 | panicle | AM | 1.73 | MC |
| SRR8582891 | panicle | PM | 1.53 | MC |
| SRR8582892 | panicle | PM | 2.06 | MC |
| SRR8582893 | panicle | PM | 1.61 | MC |
| SRR4947496 | root | control | 1.71 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.47 | MC |
| SRR1633185 | panicle | WT | 2.93 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.19 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.61 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.67 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.51 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.84 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.44 | MC |
| SRR5126147 | root | "mock,1_day" | 1.46 | MC |
| SRR5126148 | root | "mock,1_day" | 0.98 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.56 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.51 | MC |
| SRR5126153 | root | "mock,7_days" | 3.99 | MC |
| SRR5126155 | root | "mock,7_days" | 4.42 | MC |
| SRR5126157 | root | "mock,7_days" | 5.12 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.73 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.72 | MC |
| SRR5126165 | root | "mock,14_days" | 4.05 | MC |
| SRR5126169 | root | "mock,14_days" | 3.13 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.04 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.04 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.61 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.05 | MC |
| SRR1213694 | root | wt | 1.19 | MC |
| SRR4947480 | root | control | 1.56 | MC |
| SRR4947481 | root | control | 1.85 | MC |
| SRR4947484 | root | Al | 2.30 | MC |
| SRR4947485 | root | Al | 0.78 | MC |
| SRR4947488 | root | control | 1.44 | MC |
| SRR4947489 | root | control | 0.52 | MC |
| SRR4947492 | root | Al | 0.93 | MC |
| SRR4947493 | root | Al | 1.14 | MC |
| SRR4947497 | root | control | 0.75 | MC |
| SRR4947504 | root | control | 1.70 | MC |
| SRR4947505 | root | control | 0.95 | MC |
| SRR4947508 | root | Al | 1.87 | MC |
| SRR4947509 | root | Al | 2.54 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.33 | MC |
| SRR6502094 | root | control | 1.27 | MC |
| SRR6502095 | root | control | 0.66 | MC |
| SRR6502096 | root | control | 0.59 | MC |
| SRR6502103 | root | 100 mM NaCl | 1.76 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.09 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.48 | MC |
| SRR6502106 | root | control | 3.36 | MC |
| SRR6502107 | root | control | 1.45 | MC |
| SRR6502108 | root | control | 1.88 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.75 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.36 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.09 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.77 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.81 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.59 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.01 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.45 | MC |
| SRR6441554 | seedling | wild_type | 0.65 | MC |
| SRR6441555 | seedling | wild_type | 0.89 | MC |
| SRR3098741 | seedling | wt | 1.80 | MC |
| SRR3098742 | seedling | wt | 1.14 | MC |
| SRR3098743 | seedling | wt | 0.87 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.67 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.39 | MC |
| SRR1944583 | seedling | no_treatment | 3.36 | MC |
| SRR358791 | seedling | wt | 5.22 | MC |
| SRR358792 | seedling | wt | 2.16 | MC |
| SRR358793 | seedling | wt | 4.96 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.51 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.32 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.03 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.15 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.78 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 3.15 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.44 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.69 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.71 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.23 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.55 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.25 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.05 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.94 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.81 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.36 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.65 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.02 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.85 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.24 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.50 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.56 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 7.19 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.71 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 4.14 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 6.08 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 5.50 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.83 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 6.37 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.55 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 4.55 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.11 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.49 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.18 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 8.91 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.57 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.17 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.86 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.80 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 3.25 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.13 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.27 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.01 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 3.61 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.95 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.34 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.11 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.84 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.92 | MC |