| SRR4457252 | 2nd_leaf | DAH12 | 0.56 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.27 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.68 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.49 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.35 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.63 | MC |
| SRR6320473 | carpel | wt | 6.44 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.63 | MC |
| SRR4947495 | root | control | 1.14 | MC |
| SRR7265400 | coleoptile | 2dA | 0.83 | MC |
| SRR7265401 | coleoptile | 2dA | 3.43 | MC |
| SRR7265402 | coleoptile | 2dA | 0.65 | MC |
| SRR7265403 | coleoptile | 2dN | 1.01 | MC |
| SRR7265404 | coleoptile | 2dN | 1.01 | MC |
| SRR7265405 | coleoptile | 2dN | 0.80 | MC |
| SRR7265406 | coleoptile | 3dA | 2.53 | MC |
| SRR7265407 | coleoptile | 3dA | 1.58 | MC |
| SRR7265408 | coleoptile | 3dA | 2.30 | MC |
| SRR7265409 | coleoptile | 3dN | 1.16 | MC |
| SRR7265410 | coleoptile | 3dN | 0.72 | MC |
| SRR7265411 | coleoptile | 3dN | 1.21 | MC |
| SRR7265413 | coleoptile | 4dA | 2.09 | MC |
| SRR7265414 | coleoptile | 4dA | 1.11 | MC |
| SRR7265415 | coleoptile | 4dN | 3.99 | MC |
| SRR7265416 | coleoptile | 4dN | 0.81 | MC |
| SRR7265417 | coleoptile | 4dN | 0.77 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.68 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.66 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.46 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.78 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.54 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.09 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.59 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.88 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.48 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.62 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.70 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.78 | MC |
| SRR7265376 | embryo | 1hA | 1.26 | MC |
| SRR7265377 | embryo | 1hA | 1.06 | MC |
| SRR7265378 | embryo | 1hA | 0.95 | MC |
| SRR7265379 | embryo | 1hN | 0.54 | MC |
| SRR7265380 | embryo | 1hN | 0.75 | MC |
| SRR7265381 | embryo | 1hN | 0.52 | MC |
| SRR7265382 | embryo | 3hA | 2.33 | MC |
| SRR7265384 | embryo | 3hA | 0.70 | MC |
| SRR7265385 | embryo | 3hN | 1.71 | MC |
| SRR7265386 | embryo | 3hN | 0.31 | MC |
| SRR7265387 | embryo | 3hN | 0.37 | MC |
| SRR7265388 | embryo | 12hA | 1.03 | MC |
| SRR7265389 | embryo | 12hA | 1.03 | MC |
| SRR7265390 | embryo | 12hA | 0.60 | MC |
| SRR7265391 | embryo | 12hN | 2.62 | MC |
| SRR7265392 | embryo | 12hN | 0.55 | MC |
| SRR7265393 | embryo | 12hN | 0.42 | MC |
| SRR7265394 | embryo | 24hA | 1.05 | MC |
| SRR7265395 | embryo | 24hA | 3.88 | MC |
| SRR7265396 | embryo | 24hA | 0.52 | MC |
| SRR7265397 | embryo | 24hN | 1.59 | MC |
| SRR7265398 | embryo | 24hN | 1.75 | MC |
| SRR7265399 | embryo | 24hN | 0.53 | MC |
| SRR2338868 | endosprem | high_temperature | 0.75 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.42 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.23 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.66 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.59 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.34 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.33 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.47 | MC |
| SRR8060835 | leaf | wild_type | 0.76 | MC |
| SRR8240826 | leaf | wild_type | 2.27 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.11 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.14 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.98 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.60 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.21 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.62 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.96 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.40 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.75 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.58 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.84 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.41 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.63 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.45 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.92 | MC |
| SRR504365 | leaf | wt | 0.78 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.36 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.38 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.30 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.27 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.74 | MC |
| SRR6502088 | leaf | control | 0.58 | MC |
| SRR5856931 | leaf | salt | 0.96 | MC |
| SRR5856933 | leaf | control | 0.31 | MC |
| SRR5856937 | leaf | salt | 0.48 | MC |
| SRR5856938 | leaf | salt | 0.90 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 10.01 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.72 | MC |
| SRR6168979 | leaf | none (control) | 0.67 | MC |
| SRR6168980 | leaf | none (control) | 0.21 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.63 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.59 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.91 | MC |
| SRR8582890 | panicle | AM | 0.29 | MC |
| SRR8582893 | panicle | PM | 0.22 | MC |
| SRR5110430 | panicle | Dawn | 3.28 | MC |
| SRR5110431 | panicle | Dawn | 0.88 | MC |
| SRR5110432 | panicle | Dawn | 0.44 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.12 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.66 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.55 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.84 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.15 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.58 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.12 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.38 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.85 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.20 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.26 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.11 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.74 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.94 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.47 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.18 | MC |
| SRR5126153 | root | "mock,7_days" | 0.38 | MC |
| SRR5126155 | root | "mock,7_days" | 0.56 | MC |
| SRR5126157 | root | "mock,7_days" | 0.50 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.40 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.47 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.45 | MC |
| SRR5126165 | root | "mock,14_days" | 0.64 | MC |
| SRR5126167 | root | "mock,14_days" | 0.61 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.46 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.92 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.60 | MC |
| SRR4947488 | root | control | 0.84 | MC |
| SRR4947494 | root | control | 2.70 | MC |
| SRR4947498 | root | Al | 0.51 | MC |
| SRR4947499 | root | Al | 1.24 | MC |
| SRR4947505 | root | control | 0.64 | MC |
| SRR4947507 | root | Al | 2.91 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.84 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.39 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.50 | MC |
| SRR6502095 | root | control | 1.09 | MC |
| SRR6502096 | root | control | 0.69 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.48 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.79 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.20 | MC |
| SRR6502106 | root | control | 0.71 | MC |
| SRR6502107 | root | control | 1.24 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.80 | MC |
| SRR2154082 | seedling | wt | 0.42 | MC |
| SRR3098741 | seedling | wt | 0.22 | MC |
| SRR3098742 | seedling | wt | 0.24 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.51 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.65 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.16 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.98 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.84 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 4.00 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.47 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.72 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.27 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.34 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.49 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.01 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 8.37 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.97 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 7.96 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.71 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.54 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.52 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.51 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 2.59 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 8.12 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.46 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 7.90 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.80 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 7.32 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.16 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 9.92 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.65 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.66 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.95 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.47 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.48 | MC |