| SRR4457251 | 2nd_leaf | DAH4 | 0.57 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.86 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.81 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.46 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.75 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.15 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.50 | MC |
| SRR5560727 | caryopsis | wild_type | 1.05 | MC |
| SRR5560728 | caryopsis | wild_type | 4.63 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 4.53 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 4.69 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.08 | MC |
| SRR4947495 | root | control | 2.13 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.55 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.92 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.56 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.95 | MC |
| SRR7265381 | embryo | 1hN | 0.30 | MC |
| SRR7265382 | embryo | 3hA | 2.29 | MC |
| SRR7265384 | embryo | 3hA | 2.22 | MC |
| SRR7265385 | embryo | 3hN | 0.85 | MC |
| SRR7265387 | embryo | 3hN | 0.99 | MC |
| SRR7265390 | embryo | 12hA | 3.53 | MC |
| SRR7265392 | embryo | 12hN | 4.55 | MC |
| SRR7265393 | embryo | 12hN | 4.06 | MC |
| SRR7265399 | embryo | 24hN | 4.27 | MC |
| SRR2338869 | endosprem | high_temperature | 1.64 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.14 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.93 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.23 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.42 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.73 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.15 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.34 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.68 | MC |
| SRR8060835 | leaf | wild_type | 0.24 | MC |
| SRR8060836 | leaf | wild_type | 0.57 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.12 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.63 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.68 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.76 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.33 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.35 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.75 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.87 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.54 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.70 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.02 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.49 | MC |
| SRR504365 | leaf | wt | 1.59 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.86 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.52 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.36 | MC |
| SRR6417969 | leaf | H2O_control | 1.75 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.89 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.77 | MC |
| SRR8611902 | leaf | Non-inoculated | 1.47 | MC |
| SRR1213693 | leaf | wt | 0.25 | MC |
| SRR5856932 | leaf | salt | 0.30 | MC |
| SRR5856933 | leaf | control | 0.40 | MC |
| SRR5856934 | leaf | control | 0.53 | MC |
| SRR5856935 | leaf | control | 0.27 | MC |
| SRR5856936 | leaf | salt | 0.30 | MC |
| SRR6168975 | leaf | none (control) | 4.06 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.91 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.25 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.15 | MC |
| SRR6168981 | leaf | none (control) | 0.47 | MC |
| SRR8582889 | panicle | AM | 0.12 | MC |
| SRR8582891 | panicle | PM | 1.10 | MC |
| SRR8582893 | panicle | PM | 0.23 | MC |
| SRR5110430 | panicle | Dawn | 1.01 | MC |
| SRR5110446 | panicle | Dusk | 0.89 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.93 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.02 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.16 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.30 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.32 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.21 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.19 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.34 | MC |
| SRR5126147 | root | "mock,1_day" | 1.73 | MC |
| SRR5126148 | root | "mock,1_day" | 1.47 | MC |
| SRR5126149 | root | "mock,1_day" | 1.15 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126153 | root | "mock,7_days" | 1.87 | MC |
| SRR5126155 | root | "mock,7_days" | 0.96 | MC |
| SRR5126157 | root | "mock,7_days" | 1.27 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.18 | MC |
| SRR5126165 | root | "mock,14_days" | 2.00 | MC |
| SRR5126167 | root | "mock,14_days" | 0.48 | MC |
| SRR5126169 | root | "mock,14_days" | 1.33 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.72 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.83 | MC |
| SRR4947480 | root | control | 2.70 | MC |
| SRR4947481 | root | control | 3.18 | MC |
| SRR4947484 | root | Al | 2.60 | MC |
| SRR4947485 | root | Al | 3.38 | MC |
| SRR4947488 | root | control | 3.96 | MC |
| SRR4947492 | root | Al | 3.96 | MC |
| SRR4947493 | root | Al | 2.09 | MC |
| SRR4947500 | root | Al | 4.86 | MC |
| SRR4947504 | root | control | 4.83 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.24 | MC |
| SRR6441554 | seedling | wild_type | 2.00 | MC |
| SRR6441555 | seedling | wild_type | 0.64 | MC |
| SRR2154086 | seedling | wt | 3.47 | MC |
| SRR2154082 | seedling | wt | 3.47 | MC |
| SRR2154084 | seedling | wt | 1.03 | MC |
| SRR2154087 | seedling | wt | 2.69 | MC |
| SRR3098741 | seedling | wt | 1.17 | MC |
| SRR3098742 | seedling | wt | 2.73 | MC |
| SRR3098743 | seedling | wt | 1.16 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.96 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.11 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.48 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.69 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.27 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.14 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.91 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.70 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.56 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.13 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.01 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.20 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.01 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.90 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.63 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.88 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.66 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.85 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.42 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.73 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.22 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.61 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.81 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.93 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 1.27 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.84 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 2.14 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.46 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.04 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.31 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.45 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.88 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.34 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.91 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.32 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.21 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.17 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.31 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.72 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.11 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.83 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.63 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.40 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.30 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.92 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.23 | MC |