| SRR4457251 | 2nd_leaf | DAH4 | 0.64 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.54 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.67 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.78 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.24 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.68 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.89 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.00 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.78 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 1.67 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.70 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.98 | MC |
| SRR3745125 | anther | wt | 1.77 | MC |
| SRR3745127 | anther | wt | 1.68 | MC |
| SRR6320473 | carpel | wt | 2.93 | MC |
| SRR6320498 | carpel | wt | 3.77 | MC |
| SRR5560728 | caryopsis | wild_type | 0.34 | MC |
| SRR5560729 | caryopsis | wild_type | 1.60 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.60 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.83 | MC |
| SRR4947495 | root | control | 1.00 | MC |
| SRR7265400 | coleoptile | 2dA | 0.50 | MC |
| SRR7265401 | coleoptile | 2dA | 3.50 | MC |
| SRR7265402 | coleoptile | 2dA | 0.38 | MC |
| SRR7265403 | coleoptile | 2dN | 0.86 | MC |
| SRR7265404 | coleoptile | 2dN | 0.47 | MC |
| SRR7265405 | coleoptile | 2dN | 0.59 | MC |
| SRR7265406 | coleoptile | 3dA | 1.05 | MC |
| SRR7265407 | coleoptile | 3dA | 0.76 | MC |
| SRR7265409 | coleoptile | 3dN | 2.49 | MC |
| SRR7265410 | coleoptile | 3dN | 1.09 | MC |
| SRR7265411 | coleoptile | 3dN | 1.40 | MC |
| SRR7265412 | coleoptile | 4dA | 0.60 | MC |
| SRR7265413 | coleoptile | 4dA | 0.99 | MC |
| SRR7265414 | coleoptile | 4dA | 0.64 | MC |
| SRR7265415 | coleoptile | 4dN | 0.99 | MC |
| SRR7265416 | coleoptile | 4dN | 1.06 | MC |
| SRR7265417 | coleoptile | 4dN | 1.54 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.92 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.93 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.93 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.89 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.81 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.43 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.74 | MC |
| SRR7265376 | embryo | 1hA | 1.77 | MC |
| SRR7265389 | embryo | 12hA | 1.64 | MC |
| SRR7265394 | embryo | 24hA | 0.75 | MC |
| SRR7265397 | embryo | 24hN | 0.58 | MC |
| SRR7265398 | embryo | 24hN | 0.65 | MC |
| SRR7265399 | embryo | 24hN | 0.47 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.52 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.03 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.17 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.29 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.14 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.77 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.14 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.62 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.77 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.56 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.54 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.06 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.64 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.73 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.86 | MC |
| SRR8060835 | leaf | wild_type | 0.48 | MC |
| SRR8060836 | leaf | wild_type | 1.62 | MC |
| SRR8240819 | leaf | wild_type | 1.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.76 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.24 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.62 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.42 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.15 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.43 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.14 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.99 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.60 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.74 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.05 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.99 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.60 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.74 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.05 | MC |
| SRR1761528 | leaf | drought | 3.99 | MC |
| SRR1761529 | leaf | drought | 1.60 | MC |
| SRR1761530 | leaf | control | 2.74 | MC |
| SRR1761531 | leaf | control | 2.05 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.57 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.85 | MC |
| SRR6417969 | leaf | H2O_control | 1.90 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.36 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.35 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.34 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.45 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.89 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.98 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.37 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.84 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.68 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.10 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.15 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.87 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.45 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.70 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.83 | MC |
| SRR1213692 | leaf | wt | 0.32 | MC |
| SRR1213693 | leaf | wt | 1.02 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.94 | MC |
| SRR6502100 | leaf | control | 3.04 | MC |
| SRR5856931 | leaf | salt | 1.81 | MC |
| SRR5856938 | leaf | salt | 1.47 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.98 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 6.97 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 1.56 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 2.28 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 5.46 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 4.36 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 5.65 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.32 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.86 | MC |
| SRR6168979 | leaf | none (control) | 0.26 | MC |
| SRR6168980 | leaf | none (control) | 0.97 | MC |
| SRR6168981 | leaf | none (control) | 0.26 | MC |
| SRR5110431 | panicle | Dawn | 1.01 | MC |
| SRR5110432 | panicle | Dawn | 3.43 | MC |
| SRR4947496 | root | control | 0.74 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.59 | MC |
| SRR5110448 | panicle | Dusk | 0.90 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.97 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.27 | MC |
| SRR1633182 | panicle | WT | 0.36 | MC |
| SRR1633185 | panicle | WT | 2.26 | MC |
| SRR5126147 | root | "mock,1_day" | 0.81 | MC |
| SRR5126148 | root | "mock,1_day" | 2.17 | MC |
| SRR5126153 | root | "mock,7_days" | 1.33 | MC |
| SRR5126155 | root | "mock,7_days" | 2.80 | MC |
| SRR5126157 | root | "mock,7_days" | 2.56 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.33 | MC |
| SRR5126165 | root | "mock,14_days" | 1.77 | MC |
| SRR5126167 | root | "mock,14_days" | 2.38 | MC |
| SRR5126169 | root | "mock,14_days" | 1.89 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.57 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.45 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.73 | MC |
| SRR4947478 | root | control | 1.69 | MC |
| SRR4947479 | root | control | 1.40 | MC |
| SRR4947480 | root | control | 0.74 | MC |
| SRR4947481 | root | control | 2.56 | MC |
| SRR4947482 | root | Al | 2.52 | MC |
| SRR4947483 | root | Al | 0.87 | MC |
| SRR4947485 | root | Al | 0.83 | MC |
| SRR4947487 | root | control | 1.34 | MC |
| SRR4947488 | root | control | 0.63 | MC |
| SRR4947490 | root | Al | 1.10 | MC |
| SRR4947492 | root | Al | 1.36 | MC |
| SRR4947494 | root | control | 0.95 | MC |
| SRR4947497 | root | control | 1.28 | MC |
| SRR4947498 | root | Al | 1.10 | MC |
| SRR4947499 | root | Al | 1.32 | MC |
| SRR4947500 | root | Al | 1.11 | MC |
| SRR4947501 | root | Al | 1.63 | MC |
| SRR4947502 | root | control | 2.66 | MC |
| SRR4947503 | root | control | 1.08 | MC |
| SRR4947504 | root | control | 1.19 | MC |
| SRR4947505 | root | control | 1.33 | MC |
| SRR4947506 | root | Al | 1.55 | MC |
| SRR4947509 | root | Al | 0.84 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.35 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.53 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.43 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.38 | MC |
| SRR6502108 | root | control | 0.40 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.89 | MC |
| SRR1740428 | root_meristematic_zone | wt | 0.74 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.73 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.55 | MC |
| SRR2154083 | seedling | wt | 0.42 | MC |
| SRR2154087 | seedling | wt | 3.69 | MC |
| SRR3098741 | seedling | wt | 0.47 | MC |
| SRR3098742 | seedling | wt | 1.78 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.40 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.25 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.64 | MC |
| SRR358791 | seedling | wt | 5.30 | MC |
| SRR358792 | seedling | wt | 4.52 | MC |
| SRR358793 | seedling | wt | 5.60 | MC |
| SRR358794 | seedling | wt | 4.99 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.27 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.16 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.37 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.81 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 2.73 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.52 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 2.26 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.04 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.70 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.42 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.41 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.85 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.48 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.01 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.06 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.57 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.38 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.51 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.23 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.08 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.64 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.33 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.31 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |