| SRR4457249 | 2nd_leaf | DAH4 | 0.64 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.46 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.50 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.61 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.31 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.77 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.52 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.45 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.43 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.86 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.73 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.17 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.76 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.75 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.69 | MC |
| SRR5560727 | caryopsis | wild_type | 0.41 | MC |
| SRR5560728 | caryopsis | wild_type | 0.39 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.45 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.80 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.52 | MC |
| SRR7265400 | coleoptile | 2dA | 1.27 | MC |
| SRR7265401 | coleoptile | 2dA | 1.66 | MC |
| SRR7265402 | coleoptile | 2dA | 1.33 | MC |
| SRR7265403 | coleoptile | 2dN | 1.97 | MC |
| SRR7265404 | coleoptile | 2dN | 1.85 | MC |
| SRR7265405 | coleoptile | 2dN | 1.54 | MC |
| SRR7265406 | coleoptile | 3dA | 1.14 | MC |
| SRR7265407 | coleoptile | 3dA | 0.90 | MC |
| SRR7265408 | coleoptile | 3dA | 1.34 | MC |
| SRR7265409 | coleoptile | 3dN | 1.65 | MC |
| SRR7265410 | coleoptile | 3dN | 1.19 | MC |
| SRR7265411 | coleoptile | 3dN | 1.24 | MC |
| SRR7265412 | coleoptile | 4dA | 1.00 | MC |
| SRR7265413 | coleoptile | 4dA | 2.99 | MC |
| SRR7265414 | coleoptile | 4dA | 2.56 | MC |
| SRR7265415 | coleoptile | 4dN | 1.14 | MC |
| SRR7265417 | coleoptile | 4dN | 1.05 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 0.59 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.12 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.87 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.98 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.88 | MC |
| SRR7265376 | embryo | 1hA | 1.75 | MC |
| SRR7265377 | embryo | 1hA | 1.75 | MC |
| SRR7265378 | embryo | 1hA | 1.95 | MC |
| SRR7265379 | embryo | 1hN | 2.31 | MC |
| SRR7265380 | embryo | 1hN | 2.73 | MC |
| SRR7265381 | embryo | 1hN | 2.26 | MC |
| SRR7265382 | embryo | 3hA | 2.35 | MC |
| SRR7265383 | embryo | 3hA | 3.55 | MC |
| SRR7265384 | embryo | 3hA | 2.91 | MC |
| SRR7265385 | embryo | 3hN | 2.65 | MC |
| SRR7265386 | embryo | 3hN | 2.47 | MC |
| SRR7265387 | embryo | 3hN | 1.75 | MC |
| SRR7265388 | embryo | 12hA | 2.39 | MC |
| SRR7265389 | embryo | 12hA | 3.46 | MC |
| SRR7265390 | embryo | 12hA | 0.82 | MC |
| SRR7265391 | embryo | 12hN | 1.92 | MC |
| SRR7265392 | embryo | 12hN | 1.64 | MC |
| SRR7265393 | embryo | 12hN | 0.76 | MC |
| SRR7265394 | embryo | 24hA | 2.34 | MC |
| SRR7265395 | embryo | 24hA | 2.74 | MC |
| SRR7265396 | embryo | 24hA | 2.75 | MC |
| SRR7265397 | embryo | 24hN | 3.19 | MC |
| SRR7265398 | embryo | 24hN | 1.43 | MC |
| SRR7265399 | embryo | 24hN | 0.97 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.31 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.20 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.50 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.38 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.63 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.37 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.69 | MC |
| SRR1213691 | flower | wt | 0.49 | MC |
| SRR8060837 | leaf | wild_type | 0.41 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.44 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.78 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.23 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.54 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.85 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.47 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.39 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.11 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.92 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.01 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.97 | MC |
| SRR504365 | leaf | wt | 0.23 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.71 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.52 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.10 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.73 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.59 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.49 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.56 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.30 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.20 | MC |
| SRR1213692 | leaf | wt | 0.98 | MC |
| SRR1213693 | leaf | wt | 1.14 | MC |
| SRR5856929 | leaf | control | 0.33 | MC |
| SRR5856930 | leaf | salt | 0.35 | MC |
| SRR5856931 | leaf | salt | 0.40 | MC |
| SRR5856933 | leaf | control | 0.56 | MC |
| SRR5856935 | leaf | control | 0.28 | MC |
| SRR5856936 | leaf | salt | 0.26 | MC |
| SRR5856937 | leaf | salt | 0.28 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 1.99 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.13 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.98 | MC |
| SRR6168973 | leaf | none (control) | 0.52 | MC |
| SRR6168974 | leaf | none (control) | 0.54 | MC |
| SRR6168975 | leaf | none (control) | 0.39 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.86 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.49 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.15 | MC |
| SRR6168980 | leaf | none (control) | 0.23 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.57 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.74 | MC |
| SRR8582888 | panicle | AM | 1.07 | MC |
| SRR8582889 | panicle | AM | 0.33 | MC |
| SRR8582893 | panicle | PM | 0.32 | MC |
| SRR5110429 | panicle | Dawn | 1.48 | MC |
| SRR5110432 | panicle | Dawn | 0.58 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.47 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.65 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.97 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.39 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.74 | MC |
| SRR5110447 | panicle | Dusk | 0.40 | MC |
| SRR5110448 | panicle | Dusk | 1.48 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.20 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.41 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.27 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.57 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.54 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.96 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.36 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.46 | MC |
| SRR5126153 | root | "mock,7_days" | 0.68 | MC |
| SRR5126155 | root | "mock,7_days" | 0.47 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.46 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.57 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.36 | MC |
| SRR5126169 | root | "mock,14_days" | 0.46 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR1213694 | root | wt | 1.20 | MC |
| SRR1213695 | root | wt | 0.84 | MC |
| SRR4947479 | root | control | 0.69 | MC |
| SRR4947482 | root | Al | 0.37 | MC |
| SRR4947483 | root | Al | 0.42 | MC |
| SRR4947485 | root | Al | 0.92 | MC |
| SRR4947497 | root | control | 0.99 | MC |
| SRR4947498 | root | Al | 0.49 | MC |
| SRR4947500 | root | Al | 0.55 | MC |
| SRR4947504 | root | control | 0.51 | MC |
| SRR4947506 | root | Al | 0.52 | MC |
| SRR4947507 | root | Al | 1.13 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.33 | MC |
| SRR6502108 | root | control | 0.36 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.41 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.58 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.72 | MC |
| SRR2154086 | seedling | wt | 0.90 | MC |
| SRR2154082 | seedling | wt | 0.91 | MC |
| SRR2154083 | seedling | wt | 0.43 | MC |
| SRR2154085 | seedling | wt | 1.35 | MC |
| SRR2154087 | seedling | wt | 0.57 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.60 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.88 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.33 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.15 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.31 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.55 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.41 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.25 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.43 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.49 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.56 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.39 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.69 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.70 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 1.35 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.53 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.41 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.92 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.11 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.61 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.60 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.52 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.25 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.84 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.77 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.02 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.90 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.48 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.81 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.01 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.34 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.57 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.96 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.73 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.44 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.74 | MC |