| SRR4457249 | 2nd_leaf | DAH4 | 1.08 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.91 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.30 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.46 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.30 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.31 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.26 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.13 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.84 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.71 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.31 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.64 | MC |
| SRR7265401 | coleoptile | 2dA | 0.33 | MC |
| SRR7265402 | coleoptile | 2dA | 0.33 | MC |
| SRR7265406 | coleoptile | 3dA | 0.81 | MC |
| SRR7265407 | coleoptile | 3dA | 1.12 | MC |
| SRR7265408 | coleoptile | 3dA | 0.42 | MC |
| SRR7265412 | coleoptile | 4dA | 1.81 | MC |
| SRR7265413 | coleoptile | 4dA | 2.16 | MC |
| SRR7265414 | coleoptile | 4dA | 2.75 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.03 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.02 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.55 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.63 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.17 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.79 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.41 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.44 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.41 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.73 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.36 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.42 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.51 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.41 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.96 | MC |
| SRR8060835 | leaf | wild_type | 0.55 | MC |
| SRR8060836 | leaf | wild_type | 0.79 | MC |
| SRR8060837 | leaf | wild_type | 0.43 | MC |
| SRR8240825 | leaf | wild_type | 0.86 | MC |
| SRR8240818 | leaf | wild_type | 0.44 | MC |
| SRR8240819 | leaf | wild_type | 2.32 | MC |
| SRR8240820 | leaf | wild_type | 2.31 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.62 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.99 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.91 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.09 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.47 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.81 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.36 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.24 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.86 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.72 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.27 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.87 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.27 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.87 | MC |
| SRR1761528 | leaf | drought | 2.27 | MC |
| SRR1761529 | leaf | drought | 1.87 | MC |
| SRR504365 | leaf | wt | 0.25 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.71 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.59 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.46 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.39 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.61 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.25 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.12 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 3.39 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.65 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.77 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.78 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.85 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.64 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.36 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.58 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.13 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.89 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.38 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.00 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.72 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.43 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.68 | MC |
| SRR1213692 | leaf | wt | 2.07 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.44 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.69 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.53 | MC |
| SRR6502088 | leaf | control | 2.10 | MC |
| SRR6502089 | leaf | control | 0.88 | MC |
| SRR6502090 | leaf | control | 0.77 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.90 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.74 | MC |
| SRR6502101 | leaf | control | 0.54 | MC |
| SRR6502102 | leaf | control | 1.32 | MC |
| SRR5856927 | leaf | control | 2.29 | MC |
| SRR5856930 | leaf | salt | 1.85 | MC |
| SRR5856931 | leaf | salt | 1.15 | MC |
| SRR5856932 | leaf | salt | 1.23 | MC |
| SRR5856933 | leaf | control | 2.01 | MC |
| SRR5856935 | leaf | control | 1.98 | MC |
| SRR5856936 | leaf | salt | 1.50 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.90 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 6.48 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.66 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.41 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.63 | MC |
| SRR6168979 | leaf | none (control) | 0.51 | MC |
| SRR6168980 | leaf | none (control) | 0.25 | MC |
| SRR6168981 | leaf | none (control) | 0.22 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.19 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.67 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.99 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.65 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.05 | MC |
| SRR5126147 | root | "mock,1_day" | 0.83 | MC |
| SRR5126148 | root | "mock,1_day" | 0.32 | MC |
| SRR5126149 | root | "mock,1_day" | 0.91 | MC |
| SRR5126155 | root | "mock,7_days" | 3.61 | MC |
| SRR5126157 | root | "mock,7_days" | 1.06 | MC |
| SRR5126165 | root | "mock,14_days" | 0.64 | MC |
| SRR5126169 | root | "mock,14_days" | 2.30 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.42 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.98 | MC |
| SRR1213695 | root | wt | 2.45 | MC |
| SRR4947479 | root | control | 1.10 | MC |
| SRR4947481 | root | control | 0.64 | MC |
| SRR4947482 | root | Al | 1.47 | MC |
| SRR4947483 | root | Al | 0.93 | MC |
| SRR4947485 | root | Al | 0.51 | MC |
| SRR4947487 | root | control | 0.96 | MC |
| SRR4947488 | root | control | 0.79 | MC |
| SRR4947490 | root | Al | 0.61 | MC |
| SRR4947491 | root | Al | 0.49 | MC |
| SRR4947494 | root | control | 0.63 | MC |
| SRR4947498 | root | Al | 0.48 | MC |
| SRR4947499 | root | Al | 1.05 | MC |
| SRR4947503 | root | control | 0.86 | MC |
| SRR4947506 | root | Al | 1.07 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.47 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.70 | MC |
| SRR6502096 | root | control | 0.37 | MC |
| SRR6502106 | root | control | 0.44 | MC |
| SRR6441554 | seedling | wild_type | 2.11 | MC |
| SRR2154086 | seedling | wt | 0.56 | MC |
| SRR2154082 | seedling | wt | 0.49 | MC |
| SRR2154083 | seedling | wt | 3.37 | MC |
| SRR2154084 | seedling | wt | 1.14 | MC |
| SRR2154085 | seedling | wt | 1.15 | MC |
| SRR2154087 | seedling | wt | 0.42 | MC |
| SRR3098741 | seedling | wt | 0.73 | MC |
| SRR3098742 | seedling | wt | 0.31 | MC |
| SRR3098743 | seedling | wt | 0.23 | MC |
| SRR358791 | seedling | wt | 4.92 | MC |
| SRR358792 | seedling | wt | 5.97 | MC |
| SRR358793 | seedling | wt | 3.53 | MC |
| SRR358794 | seedling | wt | 3.15 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.33 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.67 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.81 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.96 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.42 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.36 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.63 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.05 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.28 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.15 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.99 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.78 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.42 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.79 | MC |