| SRR358797 | callus | wt | 1.09 | MC |
| SRR358798 | callus | wt | 0.87 | MC |
| SRR4947495 | root | control | 1.21 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.27 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.61 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.07 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.68 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.10 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.76 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR7265376 | embryo | 1hA | 0.62 | MC |
| SRR7265377 | embryo | 1hA | 0.56 | MC |
| SRR7265378 | embryo | 1hA | 0.39 | MC |
| SRR7265380 | embryo | 1hN | 0.46 | MC |
| SRR7265382 | embryo | 3hA | 1.05 | MC |
| SRR7265383 | embryo | 3hA | 0.50 | MC |
| SRR7265384 | embryo | 3hA | 0.73 | MC |
| SRR7265385 | embryo | 3hN | 0.46 | MC |
| SRR7265386 | embryo | 3hN | 0.28 | MC |
| SRR7265387 | embryo | 3hN | 0.51 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.66 | MC |
| SRR8240824 | leaf | wild_type | 0.34 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR5856933 | leaf | control | 0.20 | MC |
| SRR5856935 | leaf | control | 0.28 | MC |
| SRR6168979 | leaf | none (control) | 0.39 | MC |
| SRR6168981 | leaf | none (control) | 0.31 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.24 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.70 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.29 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.62 | MC |
| SRR5126153 | root | "mock,7_days" | 0.35 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.29 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.35 | MC |
| SRR5126165 | root | "mock,14_days" | 0.62 | MC |
| SRR5126169 | root | "mock,14_days" | 0.33 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.09 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.38 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.51 | MC |
| SRR4947478 | root | control | 1.39 | MC |
| SRR4947479 | root | control | 1.22 | MC |
| SRR4947482 | root | Al | 0.59 | MC |
| SRR4947483 | root | Al | 0.77 | MC |
| SRR4947487 | root | control | 1.29 | MC |
| SRR4947490 | root | Al | 0.63 | MC |
| SRR4947491 | root | Al | 1.18 | MC |
| SRR4947494 | root | control | 0.76 | MC |
| SRR4947499 | root | Al | 0.66 | MC |
| SRR4947502 | root | control | 0.48 | MC |
| SRR4947503 | root | control | 1.15 | MC |
| SRR4947507 | root | Al | 0.63 | MC |
| SRR6502094 | root | control | 0.48 | MC |
| SRR6502095 | root | control | 0.71 | MC |
| SRR6502096 | root | control | 0.99 | MC |
| SRR6502107 | root | control | 0.45 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.49 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.30 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.76 | MC |
| SRR6441555 | seedling | wild_type | 0.40 | MC |
| SRR2154082 | seedling | wt | 0.82 | MC |
| SRR2154084 | seedling | wt | 0.28 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.74 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.44 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.36 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.64 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.98 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.57 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.22 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.87 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.58 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.11 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.96 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.27 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.26 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.75 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.28 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.78 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.10 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.92 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |