| SRR4947495 | root | control | 0.97 | MC |
| SRR7265400 | coleoptile | 2dA | 0.29 | MC |
| SRR7265402 | coleoptile | 2dA | 0.49 | MC |
| SRR7265403 | coleoptile | 2dN | 0.34 | MC |
| SRR7265404 | coleoptile | 2dN | 0.35 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.20 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.47 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.59 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.92 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.44 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR7265376 | embryo | 1hA | 0.34 | MC |
| SRR7265377 | embryo | 1hA | 0.85 | MC |
| SRR7265378 | embryo | 1hA | 0.27 | MC |
| SRR7265381 | embryo | 1hN | 0.37 | MC |
| SRR7265382 | embryo | 3hA | 1.86 | MC |
| SRR7265383 | embryo | 3hA | 0.78 | MC |
| SRR7265384 | embryo | 3hA | 1.00 | MC |
| SRR7265386 | embryo | 3hN | 0.46 | MC |
| SRR7265389 | embryo | 12hA | 3.72 | MC |
| SRR7265391 | embryo | 12hN | 1.11 | MC |
| SRR7265392 | embryo | 12hN | 1.25 | MC |
| SRR7265393 | embryo | 12hN | 0.96 | MC |
| SRR7265395 | embryo | 24hA | 1.04 | MC |
| SRR7265396 | embryo | 24hA | 1.22 | MC |
| SRR7265397 | embryo | 24hN | 1.01 | MC |
| SRR7265399 | embryo | 24hN | 1.15 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.22 | MC |
| SRR5856927 | leaf | control | 1.24 | MC |
| SRR5856928 | leaf | control | 0.85 | MC |
| SRR5856929 | leaf | control | 0.75 | MC |
| SRR5856930 | leaf | salt | 0.85 | MC |
| SRR5856931 | leaf | salt | 1.69 | MC |
| SRR5856932 | leaf | salt | 1.52 | MC |
| SRR5856933 | leaf | control | 1.24 | MC |
| SRR5856934 | leaf | control | 2.07 | MC |
| SRR5856935 | leaf | control | 0.49 | MC |
| SRR5856936 | leaf | salt | 1.08 | MC |
| SRR5856937 | leaf | salt | 1.28 | MC |
| SRR5856938 | leaf | salt | 1.46 | MC |
| SRR4947496 | root | control | 0.78 | MC |
| SRR5126147 | root | "mock,1_day" | 0.96 | MC |
| SRR5126148 | root | "mock,1_day" | 0.57 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.88 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.97 | MC |
| SRR5126153 | root | "mock,7_days" | 1.07 | MC |
| SRR5126155 | root | "mock,7_days" | 1.24 | MC |
| SRR5126157 | root | "mock,7_days" | 1.14 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 4.14 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 4.91 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.44 | MC |
| SRR5126165 | root | "mock,14_days" | 1.04 | MC |
| SRR5126167 | root | "mock,14_days" | 0.29 | MC |
| SRR5126169 | root | "mock,14_days" | 2.23 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.31 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.07 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.39 | MC |
| SRR4947479 | root | control | 1.79 | MC |
| SRR4947480 | root | control | 0.98 | MC |
| SRR4947481 | root | control | 0.56 | MC |
| SRR4947482 | root | Al | 1.01 | MC |
| SRR4947483 | root | Al | 2.25 | MC |
| SRR4947484 | root | Al | 1.30 | MC |
| SRR4947485 | root | Al | 2.56 | MC |
| SRR4947487 | root | control | 2.00 | MC |
| SRR4947488 | root | control | 0.65 | MC |
| SRR4947489 | root | control | 0.51 | MC |
| SRR4947490 | root | Al | 3.33 | MC |
| SRR4947491 | root | Al | 3.34 | MC |
| SRR4947492 | root | Al | 1.20 | MC |
| SRR4947493 | root | Al | 1.64 | MC |
| SRR4947497 | root | control | 2.13 | MC |
| SRR4947498 | root | Al | 2.71 | MC |
| SRR4947499 | root | Al | 1.66 | MC |
| SRR4947500 | root | Al | 1.07 | MC |
| SRR4947501 | root | Al | 1.08 | MC |
| SRR4947502 | root | control | 1.85 | MC |
| SRR4947503 | root | control | 1.23 | MC |
| SRR4947504 | root | control | 0.61 | MC |
| SRR4947505 | root | control | 0.79 | MC |
| SRR4947506 | root | Al | 1.43 | MC |
| SRR4947507 | root | Al | 2.07 | MC |
| SRR4947509 | root | Al | 0.77 | MC |
| SRR6502092 | root | 100 mM NaCl | 4.42 | MC |
| SRR6502094 | root | control | 3.95 | MC |
| SRR6502095 | root | control | 1.53 | MC |
| SRR6502096 | root | control | 1.43 | MC |
| SRR6502103 | root | 100 mM NaCl | 4.70 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.01 | MC |
| SRR6502106 | root | control | 1.17 | MC |
| SRR6502107 | root | control | 1.91 | MC |
| SRR6502108 | root | control | 2.58 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.88 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.53 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.60 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.32 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.12 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.53 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.64 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.80 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.49 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.57 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.44 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.78 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 1.45 | MC |