| SRR4457249 | 2nd_leaf | DAH4 | 2.87 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.00 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 2.86 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.32 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 3.79 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.64 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.49 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.95 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 3.47 | MC |
| SRR358797 | callus | wt | 5.21 | MC |
| SRR358798 | callus | wt | 1.30 | MC |
| SRR5560729 | caryopsis | wild_type | 3.91 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.49 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.52 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.21 | MC |
| SRR4947495 | root | control | 1.23 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.57 | MC |
| SRR7265401 | coleoptile | 2dA | 1.95 | MC |
| SRR7265402 | coleoptile | 2dA | 2.90 | MC |
| SRR7265403 | coleoptile | 2dN | 2.57 | MC |
| SRR7265404 | coleoptile | 2dN | 2.65 | MC |
| SRR7265405 | coleoptile | 2dN | 2.48 | MC |
| SRR7265408 | coleoptile | 3dA | 2.05 | MC |
| SRR7265411 | coleoptile | 3dN | 2.86 | MC |
| SRR7265415 | coleoptile | 4dN | 3.40 | MC |
| SRR7265416 | coleoptile | 4dN | 1.82 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.29 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.93 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.67 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.88 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.52 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.23 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.91 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.81 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.92 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.52 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.59 | MC |
| SRR7265379 | embryo | 1hN | 3.15 | MC |
| SRR7265381 | embryo | 1hN | 2.29 | MC |
| SRR7265384 | embryo | 3hA | 2.65 | MC |
| SRR7265385 | embryo | 3hN | 2.65 | MC |
| SRR7265386 | embryo | 3hN | 2.32 | MC |
| SRR7265389 | embryo | 12hA | 1.45 | MC |
| SRR7265390 | embryo | 12hA | 2.53 | MC |
| SRR7265392 | embryo | 12hN | 1.90 | MC |
| SRR7265393 | embryo | 12hN | 3.12 | MC |
| SRR2338868 | endosprem | high_temperature | 1.68 | MC |
| SRR2338869 | endosprem | high_temperature | 1.15 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.62 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.34 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.85 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.17 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.17 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.58 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.01 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.49 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.85 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.61 | MC |
| SRR1213691 | flower | wt | 2.01 | MC |
| SRR8060835 | leaf | wild_type | 2.24 | MC |
| SRR8060836 | leaf | wild_type | 1.87 | MC |
| SRR8060837 | leaf | wild_type | 2.71 | MC |
| SRR8240825 | leaf | wild_type | 0.47 | MC |
| SRR8240818 | leaf | wild_type | 0.26 | MC |
| SRR8240819 | leaf | wild_type | 0.79 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.65 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 5.42 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.81 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 6.47 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.85 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.07 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.20 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.40 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.24 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.96 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 3.35 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.76 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.03 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.03 | MC |
| SRR1761530 | leaf | control | 4.03 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.10 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.57 | MC |
| SRR6417967 | leaf | H2O_control | 3.08 | MC |
| SRR6417969 | leaf | H2O_control | 1.87 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 2.12 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.89 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 3.60 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.97 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 2.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.31 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.51 | MC |
| SRR1213692 | leaf | wt | 3.54 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.65 | MC |
| SRR6502089 | leaf | control | 3.04 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.41 | MC |
| SRR6502100 | leaf | control | 3.36 | MC |
| SRR6502101 | leaf | control | 0.69 | MC |
| SRR6502102 | leaf | control | 1.68 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 1.36 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 4.02 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.97 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 6.40 | MC |
| SRR6168973 | leaf | none (control) | 3.30 | MC |
| SRR6168974 | leaf | none (control) | 1.93 | MC |
| SRR6168975 | leaf | none (control) | 4.90 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.22 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.40 | MC |
| SRR8582890 | panicle | AM | 1.47 | MC |
| SRR8582891 | panicle | PM | 2.60 | MC |
| SRR8582892 | panicle | PM | 4.61 | MC |
| SRR8582893 | panicle | PM | 2.80 | MC |
| SRR5110430 | panicle | Dawn | 4.08 | MC |
| SRR4947496 | root | control | 0.93 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.30 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.47 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.09 | MC |
| SRR5110449 | panicle | Dawn + 14h | 3.56 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.06 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.74 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.52 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 2.25 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.96 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.14 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.64 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.53 | MC |
| SRR5126147 | root | "mock,1_day" | 3.22 | MC |
| SRR5126148 | root | "mock,1_day" | 2.34 | MC |
| SRR5126155 | root | "mock,7_days" | 3.24 | MC |
| SRR5126157 | root | "mock,7_days" | 3.28 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.12 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 2.48 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.16 | MC |
| SRR5126165 | root | "mock,14_days" | 2.35 | MC |
| SRR5126169 | root | "mock,14_days" | 0.31 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.27 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.66 | MC |
| SRR4947478 | root | control | 2.09 | MC |
| SRR4947479 | root | control | 1.33 | MC |
| SRR4947480 | root | control | 1.73 | MC |
| SRR4947481 | root | control | 3.58 | MC |
| SRR4947483 | root | Al | 2.28 | MC |
| SRR4947484 | root | Al | 2.27 | MC |
| SRR4947485 | root | Al | 3.19 | MC |
| SRR4947487 | root | control | 2.10 | MC |
| SRR4947488 | root | control | 1.11 | MC |
| SRR4947489 | root | control | 1.28 | MC |
| SRR4947490 | root | Al | 0.76 | MC |
| SRR4947491 | root | Al | 1.46 | MC |
| SRR4947492 | root | Al | 1.26 | MC |
| SRR4947493 | root | Al | 0.98 | MC |
| SRR4947494 | root | control | 2.65 | MC |
| SRR4947497 | root | control | 1.56 | MC |
| SRR4947498 | root | Al | 1.43 | MC |
| SRR4947499 | root | Al | 1.41 | MC |
| SRR4947500 | root | Al | 2.66 | MC |
| SRR4947501 | root | Al | 2.19 | MC |
| SRR4947502 | root | control | 1.88 | MC |
| SRR4947503 | root | control | 2.25 | MC |
| SRR4947504 | root | control | 0.92 | MC |
| SRR4947505 | root | control | 0.95 | MC |
| SRR4947507 | root | Al | 1.32 | MC |
| SRR4947508 | root | Al | 1.74 | MC |
| SRR4947509 | root | Al | 1.77 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.51 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.67 | MC |
| SRR6502094 | root | control | 2.72 | MC |
| SRR6502095 | root | control | 4.56 | MC |
| SRR6502105 | root | 100 mM NaCl | 3.87 | MC |
| SRR6502106 | root | control | 2.69 | MC |
| SRR6502107 | root | control | 3.47 | MC |
| SRR6502108 | root | control | 2.86 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.99 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.44 | MC |
| SRR1740433 | root_elongation_zone | wt | 1.46 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.54 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.27 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.37 | MC |
| SRR6441554 | seedling | wild_type | 2.21 | MC |
| SRR6441555 | seedling | wild_type | 1.72 | MC |
| SRR2154086 | seedling | wt | 2.46 | MC |
| SRR2154082 | seedling | wt | 1.63 | MC |
| SRR2154083 | seedling | wt | 2.04 | MC |
| SRR2154084 | seedling | wt | 2.74 | MC |
| SRR2154085 | seedling | wt | 1.99 | MC |
| SRR2154087 | seedling | wt | 2.37 | MC |
| SRR3098741 | seedling | wt | 1.51 | MC |
| SRR3098742 | seedling | wt | 1.22 | MC |
| SRR3098743 | seedling | wt | 1.33 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.31 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.93 | MC |
| SRR1944583 | seedling | no_treatment | 2.92 | MC |
| SRR358794 | seedling | wt | 5.81 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.87 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.59 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.88 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.08 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.81 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.37 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.30 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.07 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.51 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.88 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.29 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.53 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.46 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.31 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.14 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.43 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.65 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.38 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.75 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.34 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.60 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.71 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.22 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.12 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.44 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 1.30 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.59 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.39 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.81 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.32 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.52 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.30 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.65 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.66 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.54 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.13 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.50 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.30 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.39 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.40 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.09 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.21 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.82 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.30 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 2.00 | MC |