| SRR4457249 | 2nd_leaf | DAH4 | 0.77 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.81 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.75 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.17 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.71 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.00 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.10 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.36 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.10 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.72 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 2.83 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.58 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.01 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 3.14 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.45 | MC |
| SRR3745126 | anther | wt | 0.73 | MC |
| SRR3745127 | anther | wt | 1.31 | MC |
| SRR6320473 | carpel | wt | 2.19 | MC |
| SRR6320498 | carpel | wt | 4.07 | MC |
| SRR5560727 | caryopsis | wild_type | 1.07 | MC |
| SRR5560728 | caryopsis | wild_type | 0.45 | MC |
| SRR5560729 | caryopsis | wild_type | 0.70 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.75 | MC |
| SRR7265411 | coleoptile | 3dN | 3.59 | MC |
| SRR7265412 | coleoptile | 4dA | 2.45 | MC |
| SRR7265415 | coleoptile | 4dN | 4.21 | MC |
| SRR7265416 | coleoptile | 4dN | 4.10 | MC |
| SRR7265417 | coleoptile | 4dN | 3.54 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.97 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.42 | MC |
| SRR7265385 | embryo | 3hN | 3.10 | MC |
| SRR2338869 | endosprem | high_temperature | 0.61 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.35 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.66 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.20 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.75 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.68 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.33 | MC |
| SRR4457237 | flag_leaf | DAH20 | 2.71 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.78 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.38 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.58 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.78 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.00 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.73 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.98 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.75 | MC |
| SRR4457246 | flag_leaf | DAH44 | 2.05 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.55 | MC |
| SRR4457248 | flag_leaf | DAH44 | 2.15 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.61 | MC |
| SRR8240820 | leaf | wild_type | 0.23 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.77 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.28 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.47 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.52 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.80 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.44 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.75 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.73 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.42 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.65 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.49 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.67 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.44 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.79 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.85 | MC |
| SRR504365 | leaf | wt | 0.92 | MC |
| SRR6417967 | leaf | H2O_control | 0.83 | MC |
| SRR6417969 | leaf | H2O_control | 0.63 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.57 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.34 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.79 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.57 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.98 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.82 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.43 | MC |
| SRR1213692 | leaf | wt | 1.01 | MC |
| SRR1213693 | leaf | wt | 1.65 | MC |
| SRR5856929 | leaf | control | 0.30 | MC |
| SRR5856937 | leaf | salt | 0.20 | MC |
| SRR6168973 | leaf | none (control) | 0.29 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.45 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.69 | MC |
| SRR6168979 | leaf | none (control) | 0.73 | MC |
| SRR6168981 | leaf | none (control) | 0.30 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.66 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.15 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR5110429 | panicle | Dawn | 0.37 | MC |
| SRR5110430 | panicle | Dawn | 1.58 | MC |
| SRR5110431 | panicle | Dawn | 0.94 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.58 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.93 | MC |
| SRR5110446 | panicle | Dusk | 0.87 | MC |
| SRR5110447 | panicle | Dusk | 0.60 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.70 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.17 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.57 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.82 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.47 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.57 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.06 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.33 | MC |
| SRR1633182 | panicle | WT | 1.08 | MC |
| SRR1633185 | panicle | WT | 2.93 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.60 | MC |
| SRR5126147 | root | "mock,1_day" | 0.54 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.32 | MC |
| SRR5126153 | root | "mock,7_days" | 0.58 | MC |
| SRR5126155 | root | "mock,7_days" | 0.68 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.41 | MC |
| SRR5126165 | root | "mock,14_days" | 0.89 | MC |
| SRR5126167 | root | "mock,14_days" | 0.44 | MC |
| SRR5126169 | root | "mock,14_days" | 0.35 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.18 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.72 | MC |
| SRR1213694 | root | wt | 0.28 | MC |
| SRR1213695 | root | wt | 1.97 | MC |
| SRR4947478 | root | control | 0.67 | MC |
| SRR4947479 | root | control | 1.47 | MC |
| SRR4947482 | root | Al | 0.46 | MC |
| SRR4947483 | root | Al | 0.42 | MC |
| SRR4947491 | root | Al | 0.59 | MC |
| SRR4947506 | root | Al | 0.68 | MC |
| SRR6502108 | root | control | 0.58 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.77 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.67 | MC |
| SRR1740431 | root_elongation_zone | wt | 2.22 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.33 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.36 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.08 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.11 | MC |
| SRR6441555 | seedling | wild_type | 0.43 | MC |
| SRR3098741 | seedling | wt | 0.23 | MC |
| SRR3098742 | seedling | wt | 0.33 | MC |
| SRR3098743 | seedling | wt | 0.25 | MC |
| SRR358792 | seedling | wt | 0.90 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.17 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.82 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.64 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.81 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.62 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.54 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.78 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.38 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.26 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.09 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.50 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.52 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.02 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.43 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 1.07 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.73 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.63 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.47 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.87 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.81 | MC |