| SRR4457250 | 2nd_leaf | DAH4 | 3.89 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.94 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.22 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.01 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.11 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.08 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 1.06 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.31 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 2.78 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.77 | MC |
| SRR3745126 | anther | wt | 4.78 | MC |
| SRR6320473 | carpel | wt | 2.74 | MC |
| SRR5560727 | caryopsis | wild_type | 4.02 | MC |
| SRR5560729 | caryopsis | wild_type | 5.04 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.53 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.53 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.81 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.08 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.29 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.23 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 2.61 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.62 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 2.65 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.83 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.65 | MC |
| SRR7265391 | embryo | 12hN | 4.47 | MC |
| SRR7265393 | embryo | 12hN | 2.85 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.86 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.82 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.44 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.82 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.86 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.72 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.39 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.37 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.81 | MC |
| SRR4457248 | flag_leaf | DAH44 | 5.39 | MC |
| SRR8060835 | leaf | wild_type | 2.30 | MC |
| SRR8060836 | leaf | wild_type | 3.34 | MC |
| SRR8060837 | leaf | wild_type | 0.31 | MC |
| SRR8240826 | leaf | wild_type | 0.66 | MC |
| SRR8240818 | leaf | wild_type | 0.58 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.27 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.66 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.88 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.20 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 3.36 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.45 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.00 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.60 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.39 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.58 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.22 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 3.76 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.22 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.29 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.08 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.69 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.81 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.41 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.92 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.69 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.69 | MC |
| SRR1761530 | leaf | control | 4.69 | MC |
| SRR6417967 | leaf | H2O_control | 0.50 | MC |
| SRR6417968 | leaf | H2O_control | 1.36 | MC |
| SRR6417969 | leaf | H2O_control | 1.03 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.21 | MC |
| SRR8611900 | leaf | Non-inoculated | 1.46 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.27 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.43 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.37 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 3.33 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.95 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.15 | MC |
| SRR1213693 | leaf | wt | 3.28 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.27 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.02 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.36 | MC |
| SRR6502100 | leaf | control | 2.33 | MC |
| SRR6502102 | leaf | control | 1.84 | MC |
| SRR5856937 | leaf | salt | 1.64 | MC |
| SRR5856938 | leaf | salt | 0.98 | MC |
| SRR6168973 | leaf | none (control) | 1.16 | MC |
| SRR6168975 | leaf | none (control) | 2.30 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 2.60 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 2.57 | MC |
| SRR6168980 | leaf | none (control) | 1.10 | MC |
| SRR6168981 | leaf | none (control) | 1.01 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.53 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.75 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.46 | MC |
| SRR8582888 | panicle | AM | 1.60 | MC |
| SRR8582892 | panicle | PM | 2.74 | MC |
| SRR5110429 | panicle | Dawn | 2.56 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.76 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.43 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.09 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.99 | MC |
| SRR5110447 | panicle | Dusk | 3.13 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.97 | MC |
| SRR5110458 | panicle | Dawn + 21h | 3.32 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.20 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.97 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.27 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 3.26 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 2.61 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.14 | MC |
| SRR5126148 | root | "mock,1_day" | 0.63 | MC |
| SRR5126149 | root | "mock,1_day" | 2.53 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.95 | MC |
| SRR5126157 | root | "mock,7_days" | 5.26 | MC |
| SRR5126165 | root | "mock,14_days" | 4.06 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.54 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.90 | MC |
| SRR1213694 | root | wt | 2.54 | MC |
| SRR4947480 | root | control | 3.59 | MC |
| SRR4947484 | root | Al | 4.84 | MC |
| SRR4947488 | root | control | 3.74 | MC |
| SRR4947506 | root | Al | 2.50 | MC |
| SRR6502094 | root | control | 1.32 | MC |
| SRR6502103 | root | 100 mM NaCl | 5.27 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.30 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.86 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.78 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.43 | MC |
| SRR6441554 | seedling | wild_type | 0.91 | MC |
| SRR6441555 | seedling | wild_type | 3.12 | MC |
| SRR2154086 | seedling | wt | 2.10 | MC |
| SRR2154084 | seedling | wt | 3.62 | MC |
| SRR2154085 | seedling | wt | 3.92 | MC |
| SRR3098741 | seedling | wt | 1.55 | MC |
| SRR3098743 | seedling | wt | 2.56 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.68 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.37 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.96 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.68 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.57 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.87 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.94 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.32 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 4.10 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.79 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.74 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.17 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.86 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 3.16 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.94 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.98 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.76 | MC |