| SRR4457250 | 2nd_leaf | DAH4 | 0.81 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.37 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.52 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.79 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.62 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.72 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.73 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.67 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.70 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.46 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.41 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 2.29 | MC |
| SRR358795 | callus | wt | 2.80 | MC |
| SRR358796 | callus | wt | 3.52 | MC |
| SRR358797 | callus | wt | 1.89 | MC |
| SRR358798 | callus | wt | 2.51 | MC |
| SRR5560729 | caryopsis | wild_type | 1.36 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 3.69 | MC |
| SRR4947495 | root | control | 4.81 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR7265400 | coleoptile | 2dA | 1.47 | MC |
| SRR7265401 | coleoptile | 2dA | 0.51 | MC |
| SRR7265402 | coleoptile | 2dA | 0.59 | MC |
| SRR7265403 | coleoptile | 2dN | 0.59 | MC |
| SRR7265405 | coleoptile | 2dN | 1.62 | MC |
| SRR7265406 | coleoptile | 3dA | 0.85 | MC |
| SRR7265407 | coleoptile | 3dA | 0.56 | MC |
| SRR7265408 | coleoptile | 3dA | 1.86 | MC |
| SRR7265409 | coleoptile | 3dN | 0.65 | MC |
| SRR7265410 | coleoptile | 3dN | 0.65 | MC |
| SRR7265411 | coleoptile | 3dN | 0.88 | MC |
| SRR7265412 | coleoptile | 4dA | 0.47 | MC |
| SRR7265413 | coleoptile | 4dA | 1.08 | MC |
| SRR7265414 | coleoptile | 4dA | 1.29 | MC |
| SRR7265415 | coleoptile | 4dN | 0.98 | MC |
| SRR7265416 | coleoptile | 4dN | 1.02 | MC |
| SRR7265417 | coleoptile | 4dN | 1.07 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 3.06 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.10 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.39 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.73 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.17 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.30 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.40 | MC |
| SRR7265388 | embryo | 12hA | 1.78 | MC |
| SRR7265389 | embryo | 12hA | 1.09 | MC |
| SRR7265390 | embryo | 12hA | 2.40 | MC |
| SRR7265391 | embryo | 12hN | 2.86 | MC |
| SRR7265392 | embryo | 12hN | 1.65 | MC |
| SRR7265393 | embryo | 12hN | 1.79 | MC |
| SRR7265394 | embryo | 24hA | 2.50 | MC |
| SRR7265395 | embryo | 24hA | 4.27 | MC |
| SRR7265396 | embryo | 24hA | 2.74 | MC |
| SRR7265397 | embryo | 24hN | 2.04 | MC |
| SRR7265398 | embryo | 24hN | 1.16 | MC |
| SRR7265399 | embryo | 24hN | 2.18 | MC |
| SRR976168 | flag_leaf | wild_type | 0.64 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.50 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.46 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.34 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.39 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.54 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.47 | MC |
| SRR4457240 | flag_leaf | DAH28 | 0.83 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.01 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.36 | MC |
| SRR4457247 | flag_leaf | DAH44 | 0.88 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.84 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.00 | MC |
| SRR1213691 | flower | wt | 0.73 | MC |
| SRR8060837 | leaf | wild_type | 0.85 | MC |
| SRR8240824 | leaf | wild_type | 0.97 | MC |
| SRR8240825 | leaf | wild_type | 0.50 | MC |
| SRR8240818 | leaf | wild_type | 0.63 | MC |
| SRR8240819 | leaf | wild_type | 0.60 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.59 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.23 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.26 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.29 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.36 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 4.51 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.22 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.53 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.84 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.07 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.67 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.91 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.92 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.80 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 7.09 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.67 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.46 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.57 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.90 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.36 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.20 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.69 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 4.14 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.00 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.22 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.79 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.00 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.22 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.79 | MC |
| SRR1761528 | leaf | drought | 1.00 | MC |
| SRR1761530 | leaf | control | 1.22 | MC |
| SRR1761531 | leaf | control | 0.79 | MC |
| SRR504365 | leaf | wt | 2.69 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.63 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.48 | MC |
| SRR6417967 | leaf | H2O_control | 0.90 | MC |
| SRR6417968 | leaf | H2O_control | 0.62 | MC |
| SRR6417969 | leaf | H2O_control | 0.92 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.37 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.98 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.96 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.65 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.73 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.61 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.57 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.44 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.32 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.56 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.32 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.44 | MC |
| SRR1213693 | leaf | wt | 3.84 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.75 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.20 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 4.23 | MC |
| SRR6502088 | leaf | control | 2.27 | MC |
| SRR6502089 | leaf | control | 2.17 | MC |
| SRR6502090 | leaf | control | 1.51 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.41 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.10 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.83 | MC |
| SRR6502100 | leaf | control | 1.63 | MC |
| SRR6502101 | leaf | control | 2.16 | MC |
| SRR6502102 | leaf | control | 1.08 | MC |
| SRR5856932 | leaf | salt | 0.22 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.41 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 4.39 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.19 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 4.64 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 3.41 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.50 | MC |
| SRR6168973 | leaf | none (control) | 0.72 | MC |
| SRR6168974 | leaf | none (control) | 0.77 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.85 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.29 | MC |
| SRR6168981 | leaf | none (control) | 0.30 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.27 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR8582891 | panicle | PM | 4.44 | MC |
| SRR8582892 | panicle | PM | 2.26 | MC |
| SRR5110432 | panicle | Dawn | 1.23 | MC |
| SRR4947496 | root | control | 4.50 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.43 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.88 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.79 | MC |
| SRR5110446 | panicle | Dusk | 0.42 | MC |
| SRR5110447 | panicle | Dusk | 0.42 | MC |
| SRR5110448 | panicle | Dusk | 1.26 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.44 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.16 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.64 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.46 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.49 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.51 | MC |
| SRR1633182 | panicle | WT | 0.57 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.32 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.32 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.34 | MC |
| SRR5126147 | root | "mock,1_day" | 0.34 | MC |
| SRR5126148 | root | "mock,1_day" | 2.07 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.68 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.39 | MC |
| SRR5126153 | root | "mock,7_days" | 0.50 | MC |
| SRR5126155 | root | "mock,7_days" | 0.36 | MC |
| SRR5126157 | root | "mock,7_days" | 0.89 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.44 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.71 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.56 | MC |
| SRR5126165 | root | "mock,14_days" | 1.73 | MC |
| SRR5126167 | root | "mock,14_days" | 0.29 | MC |
| SRR5126169 | root | "mock,14_days" | 2.05 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.38 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.53 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.23 | MC |
| SRR1213694 | root | wt | 0.95 | MC |
| SRR4947478 | root | control | 4.09 | MC |
| SRR4947479 | root | control | 3.54 | MC |
| SRR4947480 | root | control | 2.54 | MC |
| SRR4947481 | root | control | 1.57 | MC |
| SRR4947482 | root | Al | 2.09 | MC |
| SRR4947483 | root | Al | 3.22 | MC |
| SRR4947487 | root | control | 3.42 | MC |
| SRR4947489 | root | control | 1.26 | MC |
| SRR4947490 | root | Al | 4.12 | MC |
| SRR4947491 | root | Al | 5.01 | MC |
| SRR4947493 | root | Al | 3.03 | MC |
| SRR4947494 | root | control | 3.71 | MC |
| SRR4947497 | root | control | 5.54 | MC |
| SRR4947498 | root | Al | 3.17 | MC |
| SRR4947499 | root | Al | 4.27 | MC |
| SRR4947500 | root | Al | 1.30 | MC |
| SRR4947501 | root | Al | 3.11 | MC |
| SRR4947502 | root | control | 3.10 | MC |
| SRR4947503 | root | control | 2.65 | MC |
| SRR4947504 | root | control | 4.50 | MC |
| SRR4947505 | root | control | 2.46 | MC |
| SRR4947506 | root | Al | 1.86 | MC |
| SRR4947507 | root | Al | 3.59 | MC |
| SRR4947508 | root | Al | 4.08 | MC |
| SRR4947509 | root | Al | 4.46 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.59 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.31 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.80 | MC |
| SRR6502106 | root | control | 0.61 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.75 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.69 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.04 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.44 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.56 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.80 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.98 | MC |
| SRR2154082 | seedling | wt | 1.41 | MC |
| SRR2154083 | seedling | wt | 2.89 | MC |
| SRR2154087 | seedling | wt | 0.37 | MC |
| SRR3098741 | seedling | wt | 1.23 | MC |
| SRR3098742 | seedling | wt | 0.21 | MC |
| SRR3098743 | seedling | wt | 0.63 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.97 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.53 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.44 | MC |
| SRR1944583 | seedling | no_treatment | 1.14 | MC |
| SRR358793 | seedling | wt | 3.98 | MC |
| SRR358794 | seedling | wt | 3.27 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.90 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.30 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.65 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.92 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.56 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.44 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 3.64 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.29 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 2.40 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.83 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.64 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.19 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.91 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.91 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.68 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.70 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.23 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.89 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.82 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.36 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.78 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.59 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.59 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.67 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.75 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.76 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.40 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.36 | MC |