| SRR4457251 | 2nd_leaf | DAH4 | 0.40 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.75 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.64 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.42 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.51 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.53 | MC |
| SRR6320498 | carpel | wt | 1.77 | MC |
| SRR5560729 | caryopsis | wild_type | 0.44 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.64 | MC |
| SRR7265400 | coleoptile | 2dA | 0.78 | MC |
| SRR7265402 | coleoptile | 2dA | 0.54 | MC |
| SRR7265403 | coleoptile | 2dN | 0.93 | MC |
| SRR7265404 | coleoptile | 2dN | 0.43 | MC |
| SRR7265410 | coleoptile | 3dN | 0.38 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.32 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.18 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.01 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.97 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.01 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.02 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.98 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.77 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.22 | MC |
| SRR7265378 | embryo | 1hA | 1.39 | MC |
| SRR7265380 | embryo | 1hN | 0.43 | MC |
| SRR7265381 | embryo | 1hN | 1.35 | MC |
| SRR7265383 | embryo | 3hA | 1.49 | MC |
| SRR7265384 | embryo | 3hA | 2.44 | MC |
| SRR7265385 | embryo | 3hN | 2.56 | MC |
| SRR7265386 | embryo | 3hN | 1.75 | MC |
| SRR7265388 | embryo | 12hA | 1.28 | MC |
| SRR7265393 | embryo | 12hN | 1.99 | MC |
| SRR7265396 | embryo | 24hA | 1.61 | MC |
| SRR7265398 | embryo | 24hN | 0.82 | MC |
| SRR7265399 | embryo | 24hN | 0.91 | MC |
| SRR2338868 | endosprem | high_temperature | 0.48 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.78 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.40 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.63 | MC |
| SRR8060835 | leaf | wild_type | 0.31 | MC |
| SRR8060836 | leaf | wild_type | 0.30 | MC |
| SRR8060837 | leaf | wild_type | 0.45 | MC |
| SRR8240824 | leaf | wild_type | 0.37 | MC |
| SRR8240825 | leaf | wild_type | 1.24 | MC |
| SRR8240826 | leaf | wild_type | 0.40 | MC |
| SRR8240818 | leaf | wild_type | 0.66 | MC |
| SRR8240819 | leaf | wild_type | 0.84 | MC |
| SRR8240820 | leaf | wild_type | 1.51 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.60 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.17 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.04 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.12 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.91 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.43 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.08 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.68 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.31 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.59 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.64 | MC |
| SRR504365 | leaf | wt | 1.70 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.05 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.22 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.64 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.28 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.48 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.84 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.20 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.53 | MC |
| SRR6502088 | leaf | control | 1.23 | MC |
| SRR6502089 | leaf | control | 0.42 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.36 | MC |
| SRR6502100 | leaf | control | 2.06 | MC |
| SRR6502102 | leaf | control | 1.13 | MC |
| SRR5856929 | leaf | control | 0.24 | MC |
| SRR5856931 | leaf | salt | 0.22 | MC |
| SRR5856933 | leaf | control | 0.43 | MC |
| SRR6168974 | leaf | none (control) | 0.32 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.79 | MC |
| SRR6168979 | leaf | none (control) | 0.43 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.46 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.31 | MC |
| SRR8582890 | panicle | AM | 0.84 | MC |
| SRR8582893 | panicle | PM | 2.51 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.40 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.41 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.92 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.51 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.21 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.34 | MC |
| SRR5126147 | root | "mock,1_day" | 1.54 | MC |
| SRR5126148 | root | "mock,1_day" | 1.06 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.52 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.88 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.91 | MC |
| SRR5126155 | root | "mock,7_days" | 3.42 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.58 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.70 | MC |
| SRR1213695 | root | wt | 0.48 | MC |
| SRR4947487 | root | control | 0.88 | MC |
| SRR4947500 | root | Al | 0.55 | MC |
| SRR4947507 | root | Al | 0.99 | MC |
| SRR4947508 | root | Al | 0.52 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.25 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.52 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.88 | MC |
| SRR6502094 | root | control | 2.16 | MC |
| SRR6502095 | root | control | 1.89 | MC |
| SRR6502096 | root | control | 1.37 | MC |
| SRR6502103 | root | 100 mM NaCl | 2.32 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.29 | MC |
| SRR6502107 | root | control | 1.43 | MC |
| SRR6502108 | root | control | 1.07 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.62 | MC |
| SRR6441555 | seedling | wild_type | 0.32 | MC |
| SRR2154082 | seedling | wt | 0.36 | MC |
| SRR2154083 | seedling | wt | 0.56 | MC |
| SRR2154084 | seedling | wt | 0.31 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098742 | seedling | wt | 0.50 | MC |
| SRR3098743 | seedling | wt | 0.70 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.31 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.91 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.36 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.97 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.70 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.86 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.69 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.97 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.76 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.61 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.57 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.92 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.87 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.21 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.98 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.85 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.70 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.59 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.46 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.63 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.45 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 1.26 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.69 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.11 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.40 | MC |