| SRR5560727 | caryopsis | wild_type | 0.27 | MC |
| SRR5560728 | caryopsis | wild_type | 0.29 | MC |
| SRR5560729 | caryopsis | wild_type | 1.68 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.25 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.31 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.78 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.66 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.51 | MC |
| SRR7265376 | embryo | 1hA | 0.52 | MC |
| SRR7265377 | embryo | 1hA | 0.57 | MC |
| SRR7265378 | embryo | 1hA | 1.01 | MC |
| SRR7265379 | embryo | 1hN | 0.51 | MC |
| SRR7265380 | embryo | 1hN | 0.78 | MC |
| SRR7265381 | embryo | 1hN | 0.63 | MC |
| SRR7265384 | embryo | 3hA | 0.35 | MC |
| SRR7265386 | embryo | 3hN | 0.27 | MC |
| SRR7265387 | embryo | 3hN | 0.70 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.48 | MC |
| SRR8240820 | leaf | wild_type | 0.20 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.44 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.35 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.24 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.48 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.50 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.49 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.47 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.43 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.43 | MC |
| SRR1761529 | leaf | drought | 0.43 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.18 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.15 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.50 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.91 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.78 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.68 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.21 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.24 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.20 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR5856930 | leaf | salt | 0.34 | MC |
| SRR5856931 | leaf | salt | 0.23 | MC |
| SRR5856938 | leaf | salt | 0.18 | MC |
| SRR6168979 | leaf | none (control) | 0.21 | MC |
| SRR5110429 | panicle | Dawn | 1.29 | MC |
| SRR5110430 | panicle | Dawn | 0.88 | MC |
| SRR5110431 | panicle | Dawn | 0.92 | MC |
| SRR5110432 | panicle | Dawn | 0.66 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.59 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.36 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.62 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.54 | MC |
| SRR5110447 | panicle | Dusk | 0.39 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.69 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.75 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.29 | MC |
| SRR5110459 | panicle | Dawn + 21h | 2.03 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.57 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.38 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.24 | MC |
| SRR5126155 | root | "mock,7_days" | 0.35 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.76 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.96 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.47 | MC |
| SRR5126167 | root | "mock,14_days" | 0.78 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.69 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.83 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.54 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.93 | MC |
| SRR1213694 | root | wt | 1.66 | MC |
| SRR4947498 | root | Al | 0.62 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.08 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.28 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.20 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.35 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.78 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.85 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.22 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.32 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.66 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.19 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.15 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.01 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.97 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.05 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.65 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.45 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.93 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.39 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.45 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.25 | MC |