| SRR4457256 | 2nd_leaf | DAH20 | 0.60 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.51 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.24 | MC |
| SRR6320498 | carpel | wt | 3.54 | MC |
| SRR5560728 | caryopsis | wild_type | 0.47 | MC |
| SRR5560729 | caryopsis | wild_type | 1.01 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.91 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR7265400 | coleoptile | 2dA | 0.99 | MC |
| SRR7265401 | coleoptile | 2dA | 0.92 | MC |
| SRR7265402 | coleoptile | 2dA | 0.93 | MC |
| SRR7265404 | coleoptile | 2dN | 0.38 | MC |
| SRR7265405 | coleoptile | 2dN | 0.71 | MC |
| SRR7265406 | coleoptile | 3dA | 0.72 | MC |
| SRR7265407 | coleoptile | 3dA | 0.64 | MC |
| SRR7265408 | coleoptile | 3dA | 0.60 | MC |
| SRR7265409 | coleoptile | 3dN | 1.38 | MC |
| SRR7265410 | coleoptile | 3dN | 1.37 | MC |
| SRR7265411 | coleoptile | 3dN | 1.03 | MC |
| SRR7265413 | coleoptile | 4dA | 4.58 | MC |
| SRR7265414 | coleoptile | 4dA | 3.02 | MC |
| SRR7265415 | coleoptile | 4dN | 3.47 | MC |
| SRR7265416 | coleoptile | 4dN | 2.14 | MC |
| SRR7265417 | coleoptile | 4dN | 1.84 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.35 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.56 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.16 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.45 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.88 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.90 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.16 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.06 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.54 | MC |
| SRR7265377 | embryo | 1hA | 3.01 | MC |
| SRR7265379 | embryo | 1hN | 2.19 | MC |
| SRR7265380 | embryo | 1hN | 2.14 | MC |
| SRR7265381 | embryo | 1hN | 1.77 | MC |
| SRR7265385 | embryo | 3hN | 3.37 | MC |
| SRR7265386 | embryo | 3hN | 2.62 | MC |
| SRR7265387 | embryo | 3hN | 2.55 | MC |
| SRR7265388 | embryo | 12hA | 0.75 | MC |
| SRR7265389 | embryo | 12hA | 1.19 | MC |
| SRR7265390 | embryo | 12hA | 0.57 | MC |
| SRR7265391 | embryo | 12hN | 0.85 | MC |
| SRR7265392 | embryo | 12hN | 1.80 | MC |
| SRR7265393 | embryo | 12hN | 2.58 | MC |
| SRR7265395 | embryo | 24hA | 0.65 | MC |
| SRR7265396 | embryo | 24hA | 0.91 | MC |
| SRR7265397 | embryo | 24hN | 1.06 | MC |
| SRR7265398 | embryo | 24hN | 0.64 | MC |
| SRR7265399 | embryo | 24hN | 0.80 | MC |
| SRR2338866 | endosprem | control | 2.52 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.29 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.00 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.84 | MC |
| SRR8060835 | leaf | wild_type | 0.61 | MC |
| SRR8060836 | leaf | wild_type | 0.33 | MC |
| SRR8060837 | leaf | wild_type | 0.54 | MC |
| SRR8240826 | leaf | wild_type | 0.46 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.63 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.64 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.06 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.08 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.96 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.99 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.38 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.79 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.86 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.12 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.57 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.22 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.96 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.97 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.98 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.69 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.25 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.23 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.91 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.24 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.19 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.53 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.14 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.15 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.84 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.73 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.38 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.86 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.86 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.05 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.48 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.05 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.48 | MC |
| SRR1761528 | leaf | drought | 5.05 | MC |
| SRR1761530 | leaf | control | 0.48 | MC |
| SRR504365 | leaf | wt | 0.29 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.90 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.93 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.22 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.78 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.23 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.09 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.90 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.35 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 2.88 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.03 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.60 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.32 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.75 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.23 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.69 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.76 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.30 | MC |
| SRR1213692 | leaf | wt | 0.39 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.42 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.87 | MC |
| SRR6502088 | leaf | control | 0.51 | MC |
| SRR6502090 | leaf | control | 0.32 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.22 | MC |
| SRR5856927 | leaf | control | 1.02 | MC |
| SRR5856928 | leaf | control | 1.04 | MC |
| SRR5856929 | leaf | control | 1.04 | MC |
| SRR5856930 | leaf | salt | 0.92 | MC |
| SRR5856931 | leaf | salt | 1.07 | MC |
| SRR5856932 | leaf | salt | 1.40 | MC |
| SRR5856934 | leaf | control | 2.15 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.92 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.27 | MC |
| SRR6168974 | leaf | none (control) | 0.47 | MC |
| SRR6168975 | leaf | none (control) | 2.13 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.48 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 1.80 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.07 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.40 | MC |
| SRR1633182 | panicle | WT | 5.02 | MC |
| SRR5126147 | root | "mock,1_day" | 0.34 | MC |
| SRR5126148 | root | "mock,1_day" | 0.27 | MC |
| SRR5126149 | root | "mock,1_day" | 0.56 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.09 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.70 | MC |
| SRR5126153 | root | "mock,7_days" | 0.47 | MC |
| SRR5126155 | root | "mock,7_days" | 0.78 | MC |
| SRR5126157 | root | "mock,7_days" | 1.42 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.47 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.85 | MC |
| SRR5126165 | root | "mock,14_days" | 0.92 | MC |
| SRR5126167 | root | "mock,14_days" | 1.56 | MC |
| SRR5126169 | root | "mock,14_days" | 0.84 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.90 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.18 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.61 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.39 | MC |
| SRR1213694 | root | wt | 1.55 | MC |
| SRR1213695 | root | wt | 0.96 | MC |
| SRR4947485 | root | Al | 0.73 | MC |
| SRR4947488 | root | control | 1.10 | MC |
| SRR4947490 | root | Al | 0.69 | MC |
| SRR4947492 | root | Al | 0.84 | MC |
| SRR4947493 | root | Al | 0.90 | MC |
| SRR4947500 | root | Al | 0.81 | MC |
| SRR4947505 | root | control | 0.78 | MC |
| SRR4947506 | root | Al | 0.40 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.96 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.45 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.62 | MC |
| SRR6502095 | root | control | 0.49 | MC |
| SRR6502096 | root | control | 0.60 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.92 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.02 | MC |
| SRR6502106 | root | control | 0.67 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.94 | MC |
| SRR6441554 | seedling | wild_type | 0.30 | MC |
| SRR6441555 | seedling | wild_type | 1.84 | MC |
| SRR2154083 | seedling | wt | 0.46 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098742 | seedling | wt | 0.25 | MC |
| SRR3098743 | seedling | wt | 0.22 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.29 | MC |
| SRR358791 | seedling | wt | 1.24 | MC |
| SRR358792 | seedling | wt | 0.81 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.84 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.24 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.11 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.28 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.34 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.02 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.44 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.58 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.51 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.18 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.30 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.33 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.46 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.39 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.03 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.90 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.57 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.36 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.45 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.73 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.95 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.49 | MC |