| SRR358795 | callus | wt | 4.37 | MC |
| SRR358796 | callus | wt | 4.51 | MC |
| SRR358798 | callus | wt | 5.33 | MC |
| SRR6320473 | carpel | wt | 4.20 | MC |
| SRR5560728 | caryopsis | wild_type | 2.94 | MC |
| SRR5560729 | caryopsis | wild_type | 3.80 | MC |
| SRR4947495 | root | control | 2.85 | MC |
| SRR7265403 | coleoptile | 2dN | 1.91 | MC |
| SRR7265406 | coleoptile | 3dA | 1.38 | MC |
| SRR7265407 | coleoptile | 3dA | 0.84 | MC |
| SRR7265409 | coleoptile | 3dN | 1.97 | MC |
| SRR7265414 | coleoptile | 4dA | 2.14 | MC |
| SRR7265416 | coleoptile | 4dN | 1.95 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.73 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.04 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 2.60 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.80 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.95 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.93 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 2.21 | MC |
| SRR7265373 | embryo | dry seed 0 h | 3.31 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.04 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.53 | MC |
| SRR7265376 | embryo | 1hA | 0.63 | MC |
| SRR7265378 | embryo | 1hA | 0.99 | MC |
| SRR7265380 | embryo | 1hN | 2.02 | MC |
| SRR7265381 | embryo | 1hN | 0.37 | MC |
| SRR7265383 | embryo | 3hA | 0.81 | MC |
| SRR7265384 | embryo | 3hA | 0.95 | MC |
| SRR7265385 | embryo | 3hN | 3.67 | MC |
| SRR7265387 | embryo | 3hN | 0.31 | MC |
| SRR7265388 | embryo | 12hA | 0.53 | MC |
| SRR7265389 | embryo | 12hA | 3.22 | MC |
| SRR7265391 | embryo | 12hN | 2.22 | MC |
| SRR7265394 | embryo | 24hA | 3.28 | MC |
| SRR7265395 | embryo | 24hA | 2.54 | MC |
| SRR7265399 | embryo | 24hN | 0.75 | MC |
| SRR2338866 | endosprem | control | 2.11 | MC |
| SRR2338867 | endosprem | control | 1.83 | MC |
| SRR976168 | flag_leaf | wild_type | 1.63 | MC |
| SRR8240824 | leaf | wild_type | 0.92 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 4.31 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.74 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.59 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.06 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.57 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.38 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.88 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.83 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.45 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.42 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.11 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 5.10 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 2.46 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.61 | MC |
| SRR1213693 | leaf | wt | 3.61 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 3.97 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.63 | MC |
| SRR5856930 | leaf | salt | 1.08 | MC |
| SRR5856933 | leaf | control | 1.06 | MC |
| SRR5856934 | leaf | control | 1.45 | MC |
| SRR5856935 | leaf | control | 2.12 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 4.63 | MC |
| SRR6168974 | leaf | none (control) | 2.57 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 4.82 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.57 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 1.48 | MC |
| SRR6168980 | leaf | none (control) | 0.87 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.48 | MC |
| SRR8582892 | panicle | PM | 3.92 | MC |
| SRR5110445 | panicle | Dusk | 2.56 | MC |
| SRR5110448 | panicle | Dusk | 4.24 | MC |
| SRR1633185 | panicle | WT | 2.48 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.10 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.24 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.81 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 4.42 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.82 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.09 | MC |
| SRR5126149 | root | "mock,1_day" | 2.82 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.71 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.47 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.90 | MC |
| SRR5126153 | root | "mock,7_days" | 1.53 | MC |
| SRR5126155 | root | "mock,7_days" | 1.40 | MC |
| SRR5126157 | root | "mock,7_days" | 4.08 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.00 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.75 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.99 | MC |
| SRR5126165 | root | "mock,14_days" | 0.52 | MC |
| SRR5126167 | root | "mock,14_days" | 2.05 | MC |
| SRR5126169 | root | "mock,14_days" | 2.62 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.51 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.89 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.49 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.67 | MC |
| SRR1213694 | root | wt | 0.32 | MC |
| SRR4947480 | root | control | 2.13 | MC |
| SRR4947481 | root | control | 2.68 | MC |
| SRR4947482 | root | Al | 1.35 | MC |
| SRR4947483 | root | Al | 0.47 | MC |
| SRR4947484 | root | Al | 3.59 | MC |
| SRR4947485 | root | Al | 4.39 | MC |
| SRR4947487 | root | control | 1.30 | MC |
| SRR4947488 | root | control | 2.60 | MC |
| SRR4947489 | root | control | 2.56 | MC |
| SRR4947490 | root | Al | 1.63 | MC |
| SRR4947491 | root | Al | 1.21 | MC |
| SRR4947492 | root | Al | 2.43 | MC |
| SRR4947493 | root | Al | 3.00 | MC |
| SRR4947494 | root | control | 3.81 | MC |
| SRR4947497 | root | control | 4.34 | MC |
| SRR4947498 | root | Al | 5.74 | MC |
| SRR4947500 | root | Al | 4.41 | MC |
| SRR4947501 | root | Al | 4.19 | MC |
| SRR4947502 | root | control | 1.71 | MC |
| SRR4947503 | root | control | 3.70 | MC |
| SRR4947504 | root | control | 2.12 | MC |
| SRR4947506 | root | Al | 0.58 | MC |
| SRR4947509 | root | Al | 5.05 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.82 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.88 | MC |
| SRR6502094 | root | control | 2.66 | MC |
| SRR6502095 | root | control | 3.24 | MC |
| SRR6502104 | root | 100 mM NaCl | 4.17 | MC |
| SRR6502108 | root | control | 3.47 | MC |
| SRR1740436 | root_differentiation_zone | wt | 2.79 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.24 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.96 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.54 | MC |
| SRR2154083 | seedling | wt | 1.75 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.75 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.79 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.42 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.59 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.02 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.11 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.77 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 5.62 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.25 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.77 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 5.15 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 5.95 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.21 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.28 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 4.13 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 6.86 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.25 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.05 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.37 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.94 | MC |