| SRR358795 | callus | wt | 1.39 | MC |
| SRR358796 | callus | wt | 1.37 | MC |
| SRR358797 | callus | wt | 1.92 | MC |
| SRR358798 | callus | wt | 1.21 | MC |
| SRR5560727 | caryopsis | wild_type | 0.27 | MC |
| SRR5560728 | caryopsis | wild_type | 2.14 | MC |
| SRR7265400 | coleoptile | 2dA | 1.12 | MC |
| SRR7265401 | coleoptile | 2dA | 1.10 | MC |
| SRR7265402 | coleoptile | 2dA | 1.63 | MC |
| SRR7265403 | coleoptile | 2dN | 0.97 | MC |
| SRR7265404 | coleoptile | 2dN | 1.63 | MC |
| SRR7265405 | coleoptile | 2dN | 0.92 | MC |
| SRR7265406 | coleoptile | 3dA | 1.43 | MC |
| SRR7265407 | coleoptile | 3dA | 1.65 | MC |
| SRR7265408 | coleoptile | 3dA | 1.38 | MC |
| SRR7265409 | coleoptile | 3dN | 1.33 | MC |
| SRR7265410 | coleoptile | 3dN | 1.58 | MC |
| SRR7265411 | coleoptile | 3dN | 1.33 | MC |
| SRR7265412 | coleoptile | 4dA | 0.85 | MC |
| SRR7265413 | coleoptile | 4dA | 1.48 | MC |
| SRR7265414 | coleoptile | 4dA | 1.30 | MC |
| SRR7265415 | coleoptile | 4dN | 1.74 | MC |
| SRR7265416 | coleoptile | 4dN | 3.44 | MC |
| SRR7265417 | coleoptile | 4dN | 2.61 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.25 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 1.77 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.33 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.63 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.84 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.87 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.30 | MC |
| SRR7265376 | embryo | 1hA | 0.76 | MC |
| SRR7265377 | embryo | 1hA | 0.67 | MC |
| SRR7265378 | embryo | 1hA | 0.94 | MC |
| SRR7265379 | embryo | 1hN | 0.80 | MC |
| SRR7265380 | embryo | 1hN | 0.61 | MC |
| SRR7265381 | embryo | 1hN | 0.61 | MC |
| SRR7265382 | embryo | 3hA | 1.69 | MC |
| SRR7265383 | embryo | 3hA | 1.48 | MC |
| SRR7265384 | embryo | 3hA | 1.77 | MC |
| SRR7265385 | embryo | 3hN | 0.83 | MC |
| SRR7265386 | embryo | 3hN | 1.10 | MC |
| SRR7265387 | embryo | 3hN | 0.65 | MC |
| SRR7265388 | embryo | 12hA | 0.66 | MC |
| SRR7265389 | embryo | 12hA | 1.44 | MC |
| SRR7265390 | embryo | 12hA | 1.28 | MC |
| SRR7265391 | embryo | 12hN | 2.45 | MC |
| SRR7265392 | embryo | 12hN | 2.53 | MC |
| SRR7265393 | embryo | 12hN | 2.63 | MC |
| SRR7265394 | embryo | 24hA | 0.64 | MC |
| SRR7265395 | embryo | 24hA | 0.93 | MC |
| SRR7265396 | embryo | 24hA | 0.71 | MC |
| SRR7265397 | embryo | 24hN | 1.47 | MC |
| SRR7265398 | embryo | 24hN | 1.70 | MC |
| SRR7265399 | embryo | 24hN | 0.93 | MC |
| SRR976168 | flag_leaf | wild_type | 1.18 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.98 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.80 | MC |
| SRR1213691 | flower | wt | 0.83 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.05 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.00 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.01 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.03 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.49 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.06 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.32 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.63 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.42 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.13 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.98 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.11 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 2.28 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.40 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.22 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.89 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.07 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.59 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.63 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.26 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.67 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.97 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.01 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.02 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.20 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.12 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.71 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.65 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.15 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.54 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.16 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.74 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 4.06 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.58 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.33 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 2.71 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 4.22 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 2.71 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 4.22 | MC |
| SRR1761530 | leaf | control | 2.71 | MC |
| SRR1761531 | leaf | control | 4.22 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.50 | MC |
| SRR6417967 | leaf | H2O_control | 1.01 | MC |
| SRR6417968 | leaf | H2O_control | 0.44 | MC |
| SRR6417969 | leaf | H2O_control | 1.75 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 3.21 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.74 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.99 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.47 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 2.35 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.48 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.50 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.83 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.53 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 1.92 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.57 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.94 | MC |
| SRR8611901 | leaf | Non-inoculated | 3.08 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.65 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.05 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.43 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.34 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.27 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.74 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 2.61 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.43 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.44 | MC |
| SRR6502088 | leaf | control | 2.22 | MC |
| SRR6502089 | leaf | control | 2.92 | MC |
| SRR6502090 | leaf | control | 2.42 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.60 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 3.44 | MC |
| SRR6502100 | leaf | control | 2.85 | MC |
| SRR6502101 | leaf | control | 2.90 | MC |
| SRR6502102 | leaf | control | 3.32 | MC |
| SRR5856936 | leaf | salt | 0.35 | MC |
| SRR5856937 | leaf | salt | 0.61 | MC |
| SRR6168973 | leaf | none (control) | 0.56 | MC |
| SRR6168974 | leaf | none (control) | 0.85 | MC |
| SRR6168975 | leaf | none (control) | 0.71 | MC |
| SRR6168979 | leaf | none (control) | 0.28 | MC |
| SRR6168980 | leaf | none (control) | 0.17 | MC |
| SRR6168981 | leaf | none (control) | 0.39 | MC |
| SRR8582888 | panicle | AM | 2.05 | MC |
| SRR8582890 | panicle | AM | 1.26 | MC |
| SRR8582891 | panicle | PM | 1.32 | MC |
| SRR8582892 | panicle | PM | 2.30 | MC |
| SRR8582893 | panicle | PM | 3.04 | MC |
| SRR4947496 | root | control | 1.61 | MC |
| SRR1633182 | panicle | WT | 1.13 | MC |
| SRR1633185 | panicle | WT | 1.02 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.29 | MC |
| SRR4947480 | root | control | 1.97 | MC |
| SRR4947481 | root | control | 1.08 | MC |
| SRR4947484 | root | Al | 1.72 | MC |
| SRR4947485 | root | Al | 1.26 | MC |
| SRR4947488 | root | control | 1.39 | MC |
| SRR4947489 | root | control | 1.90 | MC |
| SRR4947492 | root | Al | 1.52 | MC |
| SRR4947493 | root | Al | 1.32 | MC |
| SRR4947497 | root | control | 2.07 | MC |
| SRR4947500 | root | Al | 1.72 | MC |
| SRR4947501 | root | Al | 1.56 | MC |
| SRR4947504 | root | control | 1.34 | MC |
| SRR4947505 | root | control | 1.28 | MC |
| SRR4947508 | root | Al | 1.53 | MC |
| SRR4947509 | root | Al | 1.21 | MC |
| SRR6441554 | seedling | wild_type | 0.92 | MC |
| SRR6441555 | seedling | wild_type | 1.23 | MC |
| SRR2154086 | seedling | wt | 1.71 | MC |
| SRR2154085 | seedling | wt | 3.34 | MC |
| SRR2154087 | seedling | wt | 1.66 | MC |
| SRR3098741 | seedling | wt | 1.57 | MC |
| SRR3098742 | seedling | wt | 0.53 | MC |
| SRR3098743 | seedling | wt | 1.47 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.85 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.89 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.62 | MC |
| SRR1944583 | seedling | no_treatment | 1.92 | MC |
| SRR358791 | seedling | wt | 5.02 | MC |
| SRR358792 | seedling | wt | 5.81 | MC |
| SRR358793 | seedling | wt | 5.11 | MC |
| SRR358794 | seedling | wt | 5.20 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.17 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.98 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.81 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.71 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.23 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.68 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.33 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.86 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.33 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.52 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.73 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.07 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.74 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 2.75 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 3.13 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 2.42 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.94 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 5.08 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.20 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.08 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.88 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.93 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.37 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.39 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.59 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.98 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 3.72 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.44 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.45 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.12 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.49 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.64 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.38 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 1.30 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.73 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.14 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.94 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.28 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.85 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.60 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.63 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.67 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.18 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.58 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.71 | MC |