| SRR358796 | callus | wt | 1.45 | MC |
| SRR358797 | callus | wt | 0.90 | MC |
| SRR358798 | callus | wt | 1.21 | MC |
| SRR6320473 | carpel | wt | 1.90 | MC |
| SRR5560727 | caryopsis | wild_type | 0.72 | MC |
| SRR5560728 | caryopsis | wild_type | 0.57 | MC |
| SRR5560729 | caryopsis | wild_type | 0.78 | MC |
| SRR4947495 | root | control | 0.54 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.65 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.36 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.62 | MC |
| SRR7265377 | embryo | 1hA | 0.46 | MC |
| SRR7265379 | embryo | 1hN | 0.37 | MC |
| SRR7265381 | embryo | 1hN | 0.25 | MC |
| SRR7265385 | embryo | 3hN | 0.51 | MC |
| SRR7265387 | embryo | 3hN | 0.34 | MC |
| SRR2338866 | endosprem | control | 1.10 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.68 | MC |
| SRR8060835 | leaf | wild_type | 0.35 | MC |
| SRR8060836 | leaf | wild_type | 0.49 | MC |
| SRR8060837 | leaf | wild_type | 0.39 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.36 | MC |
| SRR504365 | leaf | wt | 0.50 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.42 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR1213692 | leaf | wt | 1.31 | MC |
| SRR1213693 | leaf | wt | 1.94 | MC |
| SRR5856935 | leaf | control | 0.25 | MC |
| SRR5110429 | panicle | Dawn | 0.92 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.92 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.55 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.02 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.81 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.57 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.72 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.38 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.47 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.46 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.41 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.17 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.80 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.68 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.01 | MC |
| SRR1633185 | panicle | WT | 5.74 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.29 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.44 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.66 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.64 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.55 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.36 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.50 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.33 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.53 | MC |
| SRR1213695 | root | wt | 1.67 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.52 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.36 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.32 | MC |
| SRR2154083 | seedling | wt | 0.36 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.29 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.67 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.31 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.04 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.57 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.76 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.89 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.64 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.70 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.47 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.42 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 4.12 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.98 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 3.99 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.79 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 8.63 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.62 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.70 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 6.30 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.24 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.59 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 4.45 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 2.81 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 4.64 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 8.47 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 5.74 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 5.92 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.73 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 5.10 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.15 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 4.66 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.01 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.05 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.09 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.04 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.89 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.09 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.84 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.80 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.95 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.78 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.69 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.97 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.38 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.03 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.38 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.47 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.41 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.53 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.46 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.53 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.39 | MC |